PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0766s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 228aa MW: 26273.7 Da PI: 7.1975 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.8 | 4e-32 | 150 | 208 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrC++ +C+vkk+ver aedp++v++tYeg+H h+ Kalax.0766s0010.1.p 150 LDDGYKWRKYGQKVVKNTQHPRSYYRCSQDSCRVKKRVERLAEDPRMVITTYEGRHAHS 208 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-33 | 135 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-28 | 143 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.241 | 145 | 210 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-36 | 150 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 151 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLHHHLSSLF HDEQQQQQQD HHQEEVLLSS ATAAHQMGFS SYPAHHSDAN NPNFPLLVHP 60 RNINNPFSLY TNSSSSSPNN PSHLSLHKSA SNNWAWGEEN DDDDDGGDDD HQSYHPLRIS 120 AMKMKKIKSS RRKVREPRFC FKTQSDVDVL DDGYKWRKYG QKVVKNTQHP RSYYRCSQDS 180 CRVKKRVERL AEDPRMVITT YEGRHAHSPS HDLEDSDASH GLANFFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 141 | 207 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 141 | 207 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007048165.1 | 2e-76 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_021274079.1 | 1e-76 | probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 6e-57 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A1R3GCQ7 | 3e-75 | A0A1R3GCQ7_COCAP; DNA-binding WRKY | ||||
STRING | EOX92322 | 6e-76 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 2e-52 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0766s0010.1.p |