PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0757s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 285aa MW: 31162 Da PI: 9.1692 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.3 | 1.8e-28 | 37 | 86 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + YkeC+kNhAa++Ggha+DGCgE+mp +lkCaACgCHRnFHR ++ Kalax.0757s0020.1.p 37 TSSYKECQKNHAAAIGGHALDGCGEYMPP-----PLPSLKCAACGCHRNFHRLDT 86 678*************************9.....5789**************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-15 | 37 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.8E-23 | 39 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.4E-26 | 40 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.607 | 40 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.51E-17 | 172 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 173 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-26 | 178 | 234 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MKMSSDQQAQ AQQLCFKALS FSGKKERSRN EQREHETSSY KECQKNHAAA IGGHALDGCG 60 EYMPPPLPSL KCAACGCHRN FHRLDTPSAA VRVEARTIAA APIFSHPPRR FSSASPSSSS 120 SPSRSEAPIS SIYPSAPQIL MSLSSGVEMT SAHAITPATA PDPIKLCFDE DVKTDKPKKR 180 FRTKFSAEQK EKMRRFAEGF GWRMQRTDDD AVKRFCDEIG VCRSVLKVWM HNNRSRNLMG 240 INRNNNFEYN GGGLTGGRLD SEEMHVVGNN GGIQSTDGGS SSSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 179 | 235 | 18 | 74 | ZF-HD homeobox family protein |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-44 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0757s0020.1.p |