PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0756s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 319aa MW: 35447.1 Da PI: 6.9406

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0756s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	156.9	1.8e-48	75	272	2	174
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaal..... 81 +lL++cAe s++d+++a++ La l e++spdgd+++Rl+++f++A++ rl+ + +++ + +pp s + + + Kalax.0756s0016.1.p 75 LQLLIKCAELTSQSDFSAAHRPLALLLERSSPDGDSNERLVHHFAKAISYRLNYTNPTMNNFIPPFIHSYPSsaispV------Vtanns 158 689*************************************************999999999776665333243331......123466 PP GRAS 82 .................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTg 146 ++++++P+++f hltaNqaIleav+ge+ +Hi+Dfdi+qG+QWp ++qaL++R ++pp+lRiTg Kalax.0756s0016.1.p 159 htldhppsdalihhstyLTLNKITPFIRFIHLTANQAILEAVDGETNIHILDFDIMQGFQWPLFMQALSERYsssaspnhHPPPMLRITG 248 6788999998888876555************************************************9665555555599** PP GRAS 147 vgspesgskeeleetgerLakfAeelgv 174 g+ + + l +tgerL kfA++l++ Kalax.0756s0016.1.p 249 TGH----DLDVLMRTGERLLKFAQSLNL 272 ....******************98 PP
2	GRAS	39	1.2e-12	270	317	327	373
GRAS 327 vplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ls++a +qaklllr ++ s+gy++++ s++++l Wk+r L+s+S+W Kalax.0756s0016.1.p 270 LNLSSFAFSQAKLLLRLHYpSEGYKIQNLSDCFFLSWKNRLLFSISSW 317 689********************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.789	48	318	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-46	75	272	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MMGSVSSEDQ DAHPSSSSSS DLAHHHFLQL TLPPPPPPPP PPLSLSSALS LTSSSTPSFQ 60 YQNFNSLPAT TPQMLQLLIK CAELTSQSDF SAAHRPLALL LERSSPDGDS NERLVHHFAK 120 AISYRLNYTN PTMNNFIPPF IHSYPSSAIS PVVTANNSHT LDHPPSDALI HHSTYLTLNK 180 ITPFIRFIHL TANQAILEAV DGETNIHILD FDIMQGFQWP LFMQALSERY SSSASPNHHP 240 PPMLRITGTG HDLDVLMRTG ERLLKFAQSL NLSSFAFSQA KLLLRLHYPS EGYKIQNLSD 300 CFFLSWKNRL LFSISSWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-24	80	272	25	188	Protein SCARECROW
5b3h_A	4e-24	80	272	24	187	Protein SCARECROW
5b3h_D	4e-24	80	272	24	187	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021635812.1	5e-61	scarecrow-like protein 18
Swissprot	Q9ZWC5	4e-34	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A3N7FSX7	2e-60	A0A3N7FSX7_POPTR; Uncharacterized protein
STRING	POPTR_0012s02710.1	7e-59	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	9e-36	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0756s0016.1.p

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]