PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0756s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22371.3 Da PI: 10.2159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 7.9e-21 | 11 | 60 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g Kalax.0756s0008.1.p 11 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 60 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 11 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 11 | 68 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.54E-19 | 11 | 68 | No hit | No description |
SMART | SM00380 | 1.2E-39 | 11 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-14 | 11 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 11 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAEDKAAREV HFRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEEAARA YDAAAREFRG 60 TKAKTNFPSP HEPKFVTIPT VAQFKLDRSP SQSSTVESSS PPLDLQLGLL VRPVSLGFQP 120 LSPPYTHTHH HQSKANNFFL DAALGSKNSS NPLLIRPKAS YIQAKPFHFE APASDSDSSS 180 AVIDVTPKRA ILGIDLNLLP TEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 7 | 68 | 1 | 63 | ATERF1 |
3gcc_A | 3e-21 | 7 | 68 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089534.1 | 2e-46 | ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_015089545.1 | 2e-46 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | M1C387 | 8e-45 | M1C387_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058751 | 1e-45 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-26 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0756s0008.1.p |