PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0752s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 488aa MW: 53673.9 Da PI: 7.8021 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 222.7 | 1.9e-68 | 106 | 481 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL cA a+++g+++++q+lL l+el s +gd+++Rla ++AL +++ + +++++a + +++ ++l f+e+sP++ Kalax.0752s0025.1.p 106 EQLLNPCAAAIAAGNAARVQHLLIVLRELGSATGDANHRLALLGLRALTHHICPTPNTTVSAYTFASAE---PRFFQKSLLKFYELSPWF 192 689**************************************************9555555555555544...5555566666******** PP GRAS 92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLak 167 f + +aN Il+ ++++ + +Hi+D+++s+G+QWp+Ll+aL+++p ++pp +RiT++++++ + ++ L Kalax.0752s0025.1.p 193 IFPNTIANFSILQVLAEAknysRNLHILDIGVSHGVQWPTLLEALSKQPgGPPPLVRITVMAPATDEaeidqtpfaVGPPGHRFSASLLF 282 ************9988876666889************************55666********9887788887666555666777788999 PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 fA++l++++++n + + l++l+ + ++ ++ E+l+V+ +++lh+l ++ ++ r++vLkl++sl+Pk v+++e++ad+ +++F ++ Kalax.0752s0025.1.p 283 FANTLNINLRINYIENHLLQNLDAQVIDGSESENLIVSAQFRLHSLS---HKAPDDRTRVLKLIRSLNPKAVILSENNADC-GGDFPTGQ 368 *************98889****************************8...77777789***********************.789***** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346 ++ +e++++++ds++a + + r Er++++ e+ ++ + + +e +++W er++e+GF l+e++++ a+ llrk++ + Kalax.0752s0025.1.p 369 ARRVEFMWKFLDSTSAAF----KGRECEERQVVEGEAGRALVSRRWM----NEGMGRWCERMREVGFAGEGLGEEVVDAARVLLRKYDgN 450 **************8776....4555555555555565556555555....8************************************99 PP GRAS 347 dgyrveee...sgslvlgWkdrpLvsvSaWr 374 +++rv e+ g++ + Wk+ p+ ++S W+ Kalax.0752s0025.1.p 451 WEMRVGEDdggGGCVGIWWKGLPVSFCSLWK 481 99****9955445666**************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.282 | 79 | 457 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-66 | 106 | 481 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence Send to blast |
MVYEEDQQMM MQTSSNSIYN TITTTTDSAF LDDVILPDFS PSQAFEPTRK RKSADDPAPK 60 PAQARKGDGR NRSLVAKKQT GGKKKPSRSH GSNSSCGNGK DGRWAEQLLN PCAAAIAAGN 120 AARVQHLLIV LRELGSATGD ANHRLALLGL RALTHHICPT PNTTVSAYTF ASAEPRFFQK 180 SLLKFYELSP WFIFPNTIAN FSILQVLAEA KNYSRNLHIL DIGVSHGVQW PTLLEALSKQ 240 PGGPPPLVRI TVMAPATDEA EIDQTPFAVG PPGHRFSASL LFFANTLNIN LRINYIENHL 300 LQNLDAQVID GSESENLIVS AQFRLHSLSH KAPDDRTRVL KLIRSLNPKA VILSENNADC 360 GGDFPTGQAR RVEFMWKFLD STSAAFKGRE CEERQVVEGE AGRALVSRRW MNEGMGRWCE 420 RMREVGFAGE GLGEEVVDAA RVLLRKYDGN WEMRVGEDDG GGGCVGIWWK GLPVSFCSLW 480 KLAPVID* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-33 | 101 | 481 | 83 | 473 | Protein SHORT-ROOT |
5b3h_B | 6e-34 | 101 | 481 | 29 | 419 | Protein SHORT-ROOT |
5b3h_E | 6e-34 | 101 | 481 | 29 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 47 | 52 | TRKRKS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273108.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 1e-177 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | F6HXW0 | 0.0 | F6HXW0_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g01190.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-137 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0752s0025.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|