PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0752s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 38729.6 Da PI: 7.0873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G g+W+++++ g+ R++k+c++rw +yl Kalax.0752s0017.1.p 14 RGLWSPEEDEKLVNYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++t+E l++d+++ lG++ W+ Ia++++ gRt++++k++w+ Kalax.0752s0017.1.p 67 RGSFSTQEAALIIDLHAVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.341 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.94E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.465 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF STQEAALIID LHAVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSSS 120 PSAQSNFYIN PAAPSTNTFP AYCLQNNCNS LMMINSNNYV STFENELLQG TPFSLGDDNL 180 TALASSPKNH THTVGSEVYV PQISPGFKIF DLVVPDDHGA GFYQPVLNYP YECEAGINTT 240 TAWPSLMGPN SNSGIVNQST APLLVPTHDH RHLGLKNDLI QMITCDNSSM IISSDIFDDL 300 QLAGAAACSK LDTGFPQGRQ DHGEAVISSS SSSSSPISSA QLAVSLCEKT CQTW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 14 | 116 | 7 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-73 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0752s0017.1.p |