PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0747s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 121aa MW: 12999.9 Da PI: 9.1966 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 104.7 | 6.2e-33 | 17 | 102 | 16 | 100 |
NF-YC 16 fknhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +h+lPlarikki+k + edvkmis eaP ++skacelfi elt +sw a krrtl+k d+ +av td+fdflv v r++ Kalax.0747s0006.1.p 17 GPRHSLPLARIKKIMKkSGEDVKMISGEAPLVFSKACELFIEELTQKSWKVAVGGKRRTLHKEDVVEAVVGTDVFDFLVALVSRHD 102 5589***********73579************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.88E-25 | 16 | 94 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-29 | 19 | 85 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-20 | 21 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MRQAGTYSGI LSAAKNGPRH SLPLARIKKI MKKSGEDVKM ISGEAPLVFS KACELFIEEL 60 TQKSWKVAVG GKRRTLHKED VVEAVVGTDV FDFLVALVSR HDTSHSDSGH AGVEDTSHVA 120 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-31 | 20 | 100 | 16 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022730.1 | 1e-53 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 3e-31 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | B9GWG1 | 3e-51 | B9GWG1_POPTR; Uncharacterized protein | ||||
STRING | VIT_02s0025g03770.t01 | 3e-51 | (Vitis vinifera) | ||||
STRING | POPTR_0001s09100.1 | 3e-51 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-33 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0747s0006.1.p |