PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0744s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19338.7 Da PI: 5.0164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41 | 4.9e-13 | 12 | 55 | 10 | 56 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++g+Wv+eIr ps+ + r++lg+f ae+Aa+a++ a +++g+ Kalax.0744s0001.1.p 12 RSWGKWVSEIRQPSK---KSRIWLGTFPNAEMAARAHDVASFAFKGH 55 57**********965...6********************99888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.177 | 5 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-6 | 6 | 17 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-18 | 7 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-25 | 11 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-26 | 11 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.84E-26 | 11 | 64 | No hit | No description |
Pfam | PF00847 | 2.5E-7 | 12 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-6 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MRSGQLTGEL MRSWGKWVSE IRQPSKKSRI WLGTFPNAEM AARAHDVASF AFKGHSAHLN 60 FPHLITCLPR PASLLPSHIR AAASKAAAMI HPGSDPADAL SDDADQESEQ GSYWNEMGAS 120 SELVELPSLL AESEASGQDV QSRESVVAME WRPDQCWFWG DMRDIDWFVV CTHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 4 | 63 | 13 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426907.1 | 5e-37 | ethylene-responsive transcription factor ERF036 | ||||
TrEMBL | V4SHT9 | 1e-35 | V4SHT9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426907.1 | 2e-36 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 2e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0744s0001.1.p |