PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0743s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17411.6 Da PI: 8.8403 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a l+g Kalax.0743s0009.1.p 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFLLRG 78 69*****99.**********9...336*********************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.049 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-35 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 29 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.41E-26 | 30 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-10 | 30 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MMEGGGDRAE CCVNAEARNR KQRRQQEKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYT 60 TPIAAARAYD TAVFLLRGPS ARLNFPECIA KEDDEMREVS AAFIRKKATE VGARVDAHET 120 AGVQVPSSES NSRRLVIKPD LNEYPSPDET DED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 28 | 86 | 4 | 63 | ATERF1 |
3gcc_A | 4e-15 | 28 | 86 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009614221.1 | 1e-68 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
Refseq | XP_016455711.1 | 1e-68 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
Swissprot | Q8LC30 | 1e-48 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A1S3YTX4 | 3e-67 | A0A1S3YTX4_TOBAC; ethylene-responsive transcription factor ERF010-like | ||||
TrEMBL | A0A438DYH3 | 4e-67 | A0A438DYH3_VITVI; Ethylene-responsive transcription factor ERF010 | ||||
STRING | XP_009614221.1 | 5e-68 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 4e-51 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0743s0009.1.p |
Publications ? help Back to Top | |||
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