PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0743s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 214aa MW: 24042.2 Da PI: 7.0849

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0743s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.6	7e-25	10	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppG+rF Pt+++l+ +yL k + + l++ +vi e+d++ ++P +L + v +++++wy +++++++++ g +r t+ gy Kalax.0743s0006.1.p 10 LPPGCRFFPTEQQLLRHYLSGKNSVFDhhLNV-NVIGEFDVLGHDPAELIEigcfeyGVGGRRSHWYCYAPSAERKRVGG--RRRTRGGY 96 79***************9986665511555.77**********7456775545556679999999888877654..566899 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 Wk +g+ ++v+ ++g ++g ++ vf + +a+ g tdWv+ ey+l Kalax.0743s0006.1.p 97 WKRKGRVRDVVGEGGVVIGRRTDYVFClrRFEAKCGALTDWVVYEYAL 144 ************************97566999**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-30	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	32.038	10	159	IPR003441	NAC domain
Pfam	PF02365	7.0E-14	11	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MADPQAPLPL PPGCRFFPTE QQLLRHYLSG KNSVFDHHLN VNVIGEFDVL GHDPAELIEI 60 GCFEYGVGGR RSHWYCYAPS AERKRVGGRR RTRGGYWKRK GRVRDVVGEG GVVIGRRTDY 120 VFCLRRFEAK CGALTDWVVY EYALIEEDKD FVLCRAFQKS SQRKDVSQVA NFGVSDNSYL 180 HDSLDMASIL EQGDFIELDD LSKPLSSMGN AAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	2	161	12	170	NAC domain-containing protein 19
3swm_B	2e-19	2	161	12	170	NAC domain-containing protein 19
3swm_C	2e-19	2	161	12	170	NAC domain-containing protein 19
3swm_D	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_A	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_B	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_C	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_D	2e-19	2	161	12	170	NAC domain-containing protein 19
4dul_A	2e-19	2	161	9	167	NAC domain-containing protein 19
4dul_B	2e-19	2	161	9	167	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	F6H1B7	9e-45	F6H1B7_VITVI; Uncharacterized protein
STRING	VIT_18s0001g10250.t01	2e-45	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	6e-15	NAC family protein

Link Out ? help Back to Top
Phytozome	Kalax.0743s0006.1.p