PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0743s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 360aa    MW: 38756 Da    PI: 6.3524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0743s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-16178224455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Kalax.0743s0005.1.p 178 VHNLSEKRRRSRINEKLKSLQKLIPNS-----NKSDKASMLDEAIEYLKQLQ 224
                          6*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19171234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-19171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.6174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-17177228No hitNo description
PfamPF000101.9E-13178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-17180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADLYGTNAY STTPSSSSAS LPLESEDLST FLQHLLHPSP SSSSCMPFRG KHASVLPSSF  60
VSAPEGMTAA GLLNSMDEDR DGVGRMGIGP SSFVAPSAGI NFADPGGYLA TGADDVSRKG  120
FSFVDGRTIG DQVDREFRLE KDSNEFRFEN ENGAGASITH TNPVKSRSSS KRSRAAEVHN  180
LSEKRRRSRI NEKLKSLQKL IPNSNKSDKA SMLDEAIEYL KQLQLQVQML SMRKGVSLHP  240
LCMPGVAQSL HLPPGETSYG GGDDMLSRGN DMPNPISPTG TFTLNREASM PPSFDISNHG  300
NSSNQSDPRP LNNNPNSEIA FGFNQSLEAH YKAFNFCSQS KDTSAEEILH LDSGNTMKG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-37bHLH family protein