PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0735s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 205aa MW: 22911.6 Da PI: 6.5832 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.9 | 4.2e-08 | 3 | 43 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 +C+ ++++ + fC ++ lCe C H g H+ Kalax.0735s0025.1.p 3 IRCDVCNREDAAVFCSADEAALCEGCDRRVH-GankvaqkHE 43 58**************************999.4456666665 PP | |||||||
2 | zf-B_box | 26.8 | 1.1e-08 | 56 | 87 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++ C+ ++e ++ lfC++++ lC++C +H Kalax.0735s0025.1.p 56 APLCDICQERRALLFCQQDRAILCRECDYPIH 87 689************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.651 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-6 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.36E-4 | 3 | 47 | No hit | No description |
SMART | SM00336 | 7.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-11 | 54 | 101 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.812 | 54 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-7 | 56 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.67E-8 | 57 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKIRCDVCNR EDAAVFCSAD EAALCEGCDR RVHGANKVAQ KHERFSLVRP SSAADAPLCD 60 ICQERRALLF CQQDRAILCR ECDYPIHMAS EQTQKHSRFL LTGVKLTPLS SSPEDQISCE 120 REREREQSVS VSAEARVASC AKKRRHVDLR VESQATSFVE HGSGASRPAS ASSSISEYLE 180 TLPGWHVEDF FDHLHNPYYG FYNA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291815.1 | 4e-67 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 2e-63 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0D2TMT3 | 5e-65 | A0A0D2TMT3_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P6PZ03 | 5e-65 | A0A2P6PZ03_ROSCH; Putative transcription factor interactor and regulator Znf-B family | ||||
STRING | XP_004291815.1 | 1e-66 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-58 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0735s0025.1.p |