PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0733s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 516aa    MW: 54995.9 Da    PI: 5.3849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0733s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.3e-09338386355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kalax.0733s0017.1.p 338 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 386
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-11333390No hitNo description
SuperFamilySSF474597.98E-17333403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16336402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6338386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MTDDNKFETE KRPEDSMNYH PSHMSSDWAY DIIPGSSMGL DSSAACEGGN VIGSSSCPSD  60
PMMISGPDSW NRSVVGSNVG FCGIDVGNSA GSFSMLEQLR GSGELMRPMF DGEWNPKGGL  120
FLPNGPGLPL RSLSQFPSDS GFIERAARFS CFGSGSFSDM VNPFAAPESV SPLARGPSIV  180
DGSRPLAFEN EVIMAGASTS GGRNGSLSRN RSVARSLDES RQGLGASSNE SDEANFGGGD  240
GREEPSMLEA AGGETCPARG HGANKRKRAG QSARANKSNG ASPKSVDGAK PGGERSEQKP  300
SPGSNTKAPE KPEQKSQGTD PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQD  360
LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLSTVN PRLDFDIESL LTKDMFQPRA  420
GSSSTSGFPS DTCMGYQHQI TSLSAQFQAG VPISGSSMEA HLAVMGFKEP NSQLANMWDD  480
ELHNVVHMGF GNSSEPSKSQ EINDSLQSGP MKPEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654187.11e-151PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654195.11e-151PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654202.11e-151PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654208.11e-151PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_019076890.11e-151PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A2P5E2N71e-151A0A2P5E2N7_PARAD; Basic helix-loop-helix transcription factor
STRINGPOPTR_0010s14600.11e-149(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-92bHLH family protein