PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0723s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 377aa MW: 41162.2 Da PI: 9.0857 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.4e-25 | 152 | 195 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +g+k+C+rH++rgr+rsrk++e Kalax.0723s0011.1.p 152 DPEPGRCRRTDGKKWRCSRDVAPGHKYCDRHMNRGRNRSRKPVE 195 79***************************************986 PP | |||||||
2 | QLQ | 49.9 | 9.6e-18 | 78 | 112 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i++ Kalax.0723s0011.1.p 78 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIKN 112 9********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-10 | 76 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.606 | 77 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-12 | 78 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.279 | 152 | 196 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.5E-21 | 153 | 195 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDFQLMQWRD QQQQREHQSK HQAVGKDRKQ DQQQEQQSLS ALSLFLTEPV SKVGIMSGLL 60 DTPSASKFPK MMMMGGQFSS AQWQELELQA VIFRYMLAGA SVPAELLQPI KNSLLNASSF 120 FLHHPLQHYS NYQPATTVAL LESGYWGRAG MDPEPGRCRR TDGKKWRCSR DVAPGHKYCD 180 RHMNRGRNRS RKPVELLEPR TKMTPTNYAS AGGGELGNSV YPMKAPPLGV PSRAHFGSIG 240 GAAAAPSIDS LHLGQRSPFE LDRTESPHSG TSDGRVLRRF FDDWPRPMAE SGAGGIHTDL 300 MGSSASLSMS TQENSASDVS LKLSTGSGSE EASAERDRTQ LNWMAQWGQR QAGPMGGPLA 360 EALRSSATTT AAELAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018810585.1 | 1e-115 | PREDICTED: growth-regulating factor 3-like isoform X1 | ||||
TrEMBL | A0A2I4DTW3 | 1e-114 | A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1 | ||||
STRING | VIT_08s0007g03760.t01 | 1e-112 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-72 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0723s0011.1.p |