PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0708s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 356aa MW: 39788.7 Da PI: 6.2713

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0708s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.8	5.8e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s Kalax.0708s0001.1.p 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	17.9	1.3e-07	110	176	9	75
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 + +++ e+lqqel L+ +++ q+++R + + L+ s+ eL+ e+++ + ++ i ++K++l+ Kalax.0708s0001.1.p 110 AVNSNVEELQQELISLQHQLKIAQEKLRIYEPNPLDFSSMAELEACEKNILDIMSDISERKKQLMSG 176 567899**********************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.758	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.5E-38	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.07E-37	2	78	No hit	No description
SuperFamily	SSF55455	8.37E-30	2	82	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.3E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVLTRY INLPDRDRGG IALNTEYLIT TLKTLRAEND VALQLANPGA VNSNVEELQQ 120 ELISLQHQLK IAQEKLRIYE PNPLDFSSMA ELEACEKNIL DIMSDISERK KQLMSGRNQH 180 CSNFDPSSYM QMYLDGQDGV PVSTTFDNEV INWLPKNESN SNPIFVGSDP SASSISMRNH 240 TSSTIYDPMS HGSEITIDHK NMSVCHITNS TFEQMSPWHQ SYTSAELLSA LMSPSAFPQI 300 KEIGGPSMQP MMTGQQGEAT SSCQHHQATS AGENESATYD HHQPAQPPRH PIHGE*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVLTRY INLPDRDRGG IALNTEYLIT TLKTLRAEND VALQLANPGA VNSNVEELQQ  120
ELISLQHQLK IAQEKLRIYE PNPLDFSSMA ELEACEKNIL DIMSDISERK KQLMSGRNQH  180
CSNFDPSSYM QMYLDGQDGV PVSTTFDNEV INWLPKNESN SNPIFVGSDP SASSISMRNH  240
TSSTIYDPMS HGSEITIDHK NMSVCHITNS TFEQMSPWHQ SYTSAELLSA LMSPSAFPQI  300
KEIGGPSMQP MMTGQQGEAT SSCQHHQATS AGENESATYD HHQPAQPPRH PIHGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
3mu6_A	4e-17	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	4e-17	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	4e-17	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	4e-17	2	70	1	68	Myocyte-specific enhancer factor 2A
6c9l_A	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	8e-17	1	70	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652831.1	1e-145	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	3e-91	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	D7SW17	1e-145	D7SW17_VITVI; Uncharacterized protein
STRING	VIT_07s0031g01140.t01	1e-145	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-93	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Kalax.0708s0001.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]