PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0703s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 391aa    MW: 43999.3 Da    PI: 7.1881
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0703s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-093133482055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+ +q+ +WF N+R ++
  Kalax.0703s0002.1.p 313 YKWPYPSETEKVALAESTGLDHKQINNWFINQRKRH 348
                          5679*****************************885 PP
2ELK315.6e-11268289122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++KYsgyL+sLkqE+s
  Kalax.0703s0002.1.p 268 ELKLHLMKKYSGYLSSLKQELS 289
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-19121165IPR005540KNOX1
PfamPF037901.3E-20122164IPR005540KNOX1
SMARTSM012564.1E-25173224IPR005541KNOX2
PfamPF037914.1E-23177222IPR005541KNOX2
PROSITE profilePS5121310.964268288IPR005539ELK domain
PfamPF037891.0E-7268289IPR005539ELK domain
SMARTSM011889.2E-6268289IPR005539ELK domain
PROSITE profilePS5007112.94288351IPR001356Homeobox domain
SuperFamilySSF466891.71E-19289362IPR009057Homeodomain-like
SMARTSM003891.7E-11290355IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27293352IPR009057Homeodomain-like
CDDcd000863.34E-11300352No hitNo description
PfamPF059204.2E-16308347IPR008422Homeobox KN domain
PROSITE patternPS000270326349IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVGPKRLTPI RLEKQQRSGL ANFLYANSVS AASTSTYGIP SSRSTSANAA PVAGPGAGSS  60
SAFRHQYFQS DHHDSGVKRE LAVTTSQFLG QQLHQNPIGI IRENGGIERD DDQCPESDDA  120
AAIKAKIMSH PQCSNLLEAY MDCQKVGAPP QVVAQLVAAR EEFEKQQGSS SSSRKDISRD  180
PELDQFMEAY YDMLLKYREE LTRPLQEAMD FMRRIESQLN MLGASPIRTY NPSDEKSSDG  240
VGSSEEEGDN GGETDQLPKI DPRAEDRELK LHLMKKYSGY LSSLKQELSK KRKKGKLPKE  300
ARQKLLAWWE LHYKWPYPSE TEKVALAEST GLDHKQINNW FINQRKRHWK PSEDIQFMVM  360
DGMHHQNASA LYMDGGHYMG PDHCSYRTRP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283292LKQELSKKRK
2289293KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2406610.0EU240661.1 Kalanchoe x houghtonii knotted-like homeobox protein (KN5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022768584.11e-147homeobox protein knotted-1-like 2 isoform X1
SwissprotO041351e-140KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB1P1S10.0B1P1S1_9MAGN; Knotted-like homeobox protein
STRINGXP_006472353.11e-145(Citrus sinensis)
STRINGGorai.009G223200.11e-145(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-103KNOTTED-like from Arabidopsis thaliana