PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0693s0012.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 235aa MW: 25315.6 Da PI: 8.6306

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0693s0012.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.6	4.3e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl+h+kSHLQkYRl Kalax.0693s0012.2.p 1 MRTMGVKGLTLYHLKSHLQKYRL 23 689*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-10	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	1.9E-26	67	113	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MRTMGVKGLT LYHLKSHLQK YRLGKQAGKE STENSKEASC MAENQDTGSS ASPSSRVIAQ 60 EINDSYQVTE ALRLQMDVQR RLHEQLEVQR RLQLRIEAQG KYLQAILEKA CKAFNDQAAA 120 AAGLEAAREE LSGLAIKVSH DSQGLAPLDD LKMPSLSDIT TTFASNSQTA PNFPARLGDC 180 SIDSCLTSTG SPASPAGLTA QTASLKRRRR PMTGNGESFP FPSMQAVGWM PNSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	210	LKRRRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006369801.1	1e-113	protein PHR1-LIKE 3
Swissprot	Q94A57	2e-84	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5GS23	1e-112	U5GS23_POPTR; Uncharacterized protein
STRING	POPTR_0001s32200.1	1e-115	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-74	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0693s0012.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]