PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0693s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 306aa MW: 33061.3 Da PI: 8.2093

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0693s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.8e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Kalax.0693s0012.1.p 40 KPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.336	37	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-32	37	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	40	95	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.29E-16	40	95	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-26	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MYSVIRSLPL DGSGEYRQIS SLDGTNLPGD ACLFMTSDPK PRLRWTADLH DRFVDAVAQL 60 GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KYRLGKQAGK ESTENSKEAS CMAENQDTGS 120 SASPSSRVIA QEINDSYQVT EALRLQMDVQ RRLHEQLEVQ RRLQLRIEAQ GKYLQAILEK 180 ACKAFNDQAA AAAGLEAARE ELSGLAIKVS HDSQGLAPLD DLKMPSLSDI TTTFASNSQT 240 APNFPARLGD CSIDSCLTST GSPASPAGLT AQTASLKRRR RPMTGNGESF PFPSMQAVGW 300 MPNSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	281	LKRRRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006369801.1	1e-161	protein PHR1-LIKE 3
Swissprot	Q94A57	1e-129	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5GS23	1e-159	U5GS23_POPTR; Uncharacterized protein
STRING	XP_002518104.1	1e-157	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-119	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0693s0012.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]