PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0683s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 303aa MW: 33061.6 Da PI: 9.3546 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.9 | 1.5e-19 | 23 | 69 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +e ksnr+vtfskRr ++ KA+EL++L +a va++ifs+ gk+y + Kalax.0683s0002.1.p 23 VEKKSNRNVTFSKRRSSLFEKASELCTLSGAHVAIMIFSPAGKIYSF 69 799******************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-25 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.694 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.98E-30 | 14 | 82 | No hit | No description |
PRINTS | PR00404 | 5.6E-16 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-24 | 15 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-20 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-16 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-16 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MATAAPPKKK RPQGGKKIEM KLVEKKSNRN VTFSKRRSSL FEKASELCTL SGAHVAIMIF 60 SPAGKIYSFG SPSVEAVVQR YEAPLPTGGS SQPHSNSSGL DSWRVAVNRV EGTRKLKTEL 120 SQTLESIECE KVKSQILDAA WERDRALWWN NPAEEMDLTR CKVLEQKLME LKMRVDAEVK 180 NRPPEDYEKV LDGHDYLSAA IPLSLAHLMP NHASVCPSND FMSWWINNIG ATPSNYIILG 240 PNNAANVSPI NFPTGMYNFG GSSASNFGPM SSSRSTAGVM NPGFGPNSSY CVGPSSRINF 300 TG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-32 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0683s0002.1.p |