PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0681s0020.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 401aa MW: 43237.2 Da PI: 7.603

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0681s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.9	1.6e-36	91	150	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC s++tkfCy+nny +qPryfC++C+ryWt GG++rn+PvG+grrk+k+s Kalax.0681s0020.1.p 91 PDKIIPCPRCASMDTKFCYFNNYKANQPRYFCRKCQRYWTSGGTMRNLPVGAGRRKSKSS 150 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	84	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-30	93	149	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.99	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDDEDQIPEP LSDAPTKLFG PSIAEPSPPP RPSGSEGACD ADVEEGRGCG MESGLDDESD 60 DEKTDQQDAT AGTNGGQKSE AGAQEKTLKK PDKIIPCPRC ASMDTKFCYF NNYKANQPRY 120 FCRKCQRYWT SGGTMRNLPV GAGRRKSKSS APQRQQMEVP RDFQTVSARG SNGVVAHNGS 180 VPQVSSPKGV EKASRLNGLC KPKELKISSS HETVVDGSRS GSAGSGSNIE NEGQATARAV 240 RGYQSFQPHM LCFPAPLWPP FPWNPAQYNC PLPSPIIYRP GFPVPFYPCV PGAWNVPLSA 300 HPSSPSLQSE PKSPTLGKHS RDDIDNAAKP GNTQAGERPK EGNPKPSIWV PKTVRIDDLE 360 EAAKSSMWAT LGIKYDNILQ SNGKGYLNPF SSLAVETERS *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDDEDQIPEP LSDAPTKLFG PSIAEPSPPP RPSGSEGACD ADVEEGRGCG MESGLDDESD  60
DEKTDQQDAT AGTNGGQKSE AGAQEKTLKK PDKIIPCPRC ASMDTKFCYF NNYKANQPRY  120
FCRKCQRYWT SGGTMRNLPV GAGRRKSKSS APQRQQMEVP RDFQTVSARG SNGVVAHNGS  180
VPQVSSPKGV EKASRLNGLC KPKELKISSS HETVVDGSRS GSAGSGSNIE NEGQATARAV  240
RGYQSFQPHM LCFPAPLWPP FPWNPAQYNC PLPSPIIYRP GFPVPFYPCV PGAWNVPLSA  300
HPSSPSLQSE PKSPTLGKHS RDDIDNAAKP GNTQAGERPK EGNPKPSIWV PKTVRIDDLE  360
EAAKSSMWAT LGIKYDNILQ SNGKGYLNPF SSLAVETERS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088142.1	2e-90	cyclic dof factor 2
TrEMBL	W9QEV1	5e-89	W9QEV1_9ROSA; Dof zinc finger protein
STRING	XP_010088142.1	8e-90	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-56	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Kalax.0681s0020.1.p