PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0680s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 214aa    MW: 22787.1 Da    PI: 7.8966
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0680s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.1e-381777262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +e++lkcprCds ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGg++rk  k+s
  Kalax.0680s0018.1.p 17 EEEKLKCPRCDSLNTKFCYYNNYNLSQPRHYCKSCKRYWTKGGSLRNIPVGGSSRKTTKRS 77
                         6899****************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-221366IPR003851Zinc finger, Dof-type
PfamPF027016.7E-331975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.362175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEELAAYQSI KPPQFQEEEK LKCPRCDSLN TKFCYYNNYN LSQPRHYCKS CKRYWTKGGS  60
LRNIPVGGSS RKTTKRSSSS NSVTGKAAAP SSSNSAHRPE SGPKYAFSDD QESTVLSMGG  120
GAGGFGLSFS SLLPSEGQLG HSILGAMNGS GYGGFQSGLF GTAFGHKGLD SGTEVTNVSE  180
GFLGIQHGNE QWSSGGEHVW PDLAIYTPSP TFE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529737.15e-57dof zinc finger protein DOF3.1
RefseqXP_028238849.15e-57dof zinc finger protein DOF3.1-like
SwissprotO821556e-38DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A445JQM71e-55A0A445JQM7_GLYSO; Dof zinc finger protein DOF1.7
TrEMBLK7KYZ61e-55K7KYZ6_SOYBN; Uncharacterized protein
STRINGGLYMA07G01461.12e-56(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-31DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]