PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0676s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 437aa MW: 47941.6 Da PI: 6.1933 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.2e-15 | 178 | 237 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Kalax.0676s0008.1.p 178 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 237 789******************655454477446*************************98 PP | |||||||
2 | AP2 | 48.6 | 2e-15 | 280 | 331 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Kalax.0676s0008.1.p 280 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 331 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.23E-21 | 178 | 245 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-16 | 178 | 246 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.663 | 179 | 245 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 179 | 237 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-29 | 179 | 251 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 179 | 246 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 180 | 191 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.82E-25 | 280 | 341 | No hit | No description |
Pfam | PF00847 | 4.0E-10 | 280 | 331 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-18 | 280 | 341 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.006 | 281 | 339 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-34 | 281 | 345 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-19 | 281 | 340 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 321 | 341 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MTDGDGARGA PRLENLLGCR YPSTDSLVEE CKASDEAYQT DLNKPMGGIE LYSNADPCPP 60 RVPEAFGNFG QIGDLFGSYS DGGGDGGNNG YGGVPFDGAT SVSGFKSLMR LNNCSGCFYC 120 EKSDNGVEPS DNLLALCTSN GTSQGSELSD HRKRAVEASA AVEPVPRKNT DTFGQRTSQF 180 RGVTRHRWTG RYEAHLWDNS CRKEGQSRKG RQVYLGGYDK EEKAARAYDL AALKYWGTTT 240 HTNFPLVNYE KEVEEMKNTT RHEYVANLRR KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR 300 VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDV SRYDVKRICS SSTLITNDSA 360 KSKDSNPNSP EEDQCENDSS FASSASAKHI IPVPTAPHLS TDLCWTDDCI QSSQLSPIVY 420 LDSYNEFQTA RTGYMD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022777228.1 | 1e-144 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-125 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A061GBL4 | 1e-140 | A0A061GBL4_THECC; AP2 domain-containing transcription factor | ||||
TrEMBL | A0A1U8B027 | 1e-140 | A0A1U8B027_NELNU; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | EOY27240 | 1e-141 | (Theobroma cacao) | ||||
STRING | XP_010273924.1 | 1e-141 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-118 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0676s0008.1.p |
Publications ? help Back to Top | |||
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