PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0674s0024.4.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 733aa MW: 84199.9 Da PI: 7.1129

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0674s0024.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.5e-07	1	26	66	91
FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vk++++gkw++++++++HnHel p Kalax.0674s0024.4.p 1 MHVKRRQNGKWYIYNFVKDHNHELLP 26 89*********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	7.0E-26	139	231	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	419	455	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-6	429	453	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-5	430	457	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MHVKRRQNGK WYIYNFVKDH NHELLPEQAH FFRSHRNVDS IKNDLRIRKR KILAAGSKQF 60 SAYRNVDFLD GYIRNQHDKG QILSLESGDS QMLLEFCMYM QEKNPKFFYA MDFNEEHRLR 120 NVFWVSSKGV DDYNYFSDVV SVDTTYVTAK YKIPLVIIIG VNNHIQPTLL GCGLIADETL 180 YTFVWLLQTW LISMGGRAPR VILTDQNSAL KQAVAAVFPE SRHCFALWNV LEKIPSKLEY 240 VIRWQDNFVI KLNKCIYKSL TEEQFESRWS KLLDRFTLRE DEWVQSLYED RRQWVPIFMR 300 DISFAGLSAP SRAESLNTWF DNYIDAYSSL REFIERYKLI VEDMHEEEAK ANFDGWHEIP 360 DLKTPSPFEK QTLLVYTHEI FKKFQIEVLG AAACHLKKEN DYGPIATYSV KDFADNQVFM 420 VTWDQTKLDI GCSCRSFEYK GYVCRHAIVV LQMSGVFSIP FKYILQRWTN VAVSRHAMSD 480 RLDEVQAKIR RFNELCRRAI ILGEEGSLSE QSYNVALIAI EDALKQFKNT SSLDCDSRPH 540 SALRQAFSGN EEVNDGSTAA AVHEVPGTSL TSSSKSQKRS DSGNKKFESY ESMMGKVQPV 600 QGLVNAGSQV GYAFMDNAHA TSLIPNAPLV VQHNMAPVRL QSLPAHIQST MPAQYHSSIP 660 PCVEDKHIQE AWRGPEGPMT RELLVSSLIR KKTFEEIISA EWKALDSPTQ EDPIPIQITT 720 SSPCSHALRI CQ*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MHVKRRQNGK WYIYNFVKDH NHELLPEQAH FFRSHRNVDS IKNDLRIRKR KILAAGSKQF  60
SAYRNVDFLD GYIRNQHDKG QILSLESGDS QMLLEFCMYM QEKNPKFFYA MDFNEEHRLR  120
NVFWVSSKGV DDYNYFSDVV SVDTTYVTAK YKIPLVIIIG VNNHIQPTLL GCGLIADETL  180
YTFVWLLQTW LISMGGRAPR VILTDQNSAL KQAVAAVFPE SRHCFALWNV LEKIPSKLEY  240
VIRWQDNFVI KLNKCIYKSL TEEQFESRWS KLLDRFTLRE DEWVQSLYED RRQWVPIFMR  300
DISFAGLSAP SRAESLNTWF DNYIDAYSSL REFIERYKLI VEDMHEEEAK ANFDGWHEIP  360
DLKTPSPFEK QTLLVYTHEI FKKFQIEVLG AAACHLKKEN DYGPIATYSV KDFADNQVFM  420
VTWDQTKLDI GCSCRSFEYK GYVCRHAIVV LQMSGVFSIP FKYILQRWTN VAVSRHAMSD  480
RLDEVQAKIR RFNELCRRAI ILGEEGSLSE QSYNVALIAI EDALKQFKNT SSLDCDSRPH  540
SALRQAFSGN EEVNDGSTAA AVHEVPGTSL TSSSKSQKRS DSGNKKFESY ESMMGKVQPV  600
QGLVNAGSQV GYAFMDNAHA TSLIPNAPLV VQHNMAPVRL QSLPAHIQST MPAQYHSSIP  660
PCVEDKHIQE AWRGPEGPMT RELLVSSLIR KKTFEEIISA EWKALDSPTQ EDPIPIQITT  720
SSPCSHALRI CQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274627.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	F6GYH1	0.0	F6GYH1_VITVI; Uncharacterized protein
STRING	VIT_09s0054g01830.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Kalax.0674s0024.4.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]