PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0674s0024.10.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 762aa MW: 87505.2 Da PI: 7.6155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0674s0024.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.7	3.1e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYAk vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw++++++++HnHel Kalax.0674s0024.10.p 29 YYKEYAKLVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIYNFVKDHNHELL 113 9*************************************999877....9**********************************97 PP FAR1 91 p 91 p Kalax.0674s0024.10.p 114 P 114 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.4E-26	227	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-6	517	541	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-5	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MESSEATGNV TSEPHRELEF ESHEDAYSYY KEYAKLVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYNFVKDHNH ELLPEQAHFF 120 RSHRNVDSIK NDLRIRKRKI LAAGSKQFSA YRNVDFLDGY IRNQHDKGQI LSLESGDSQM 180 LLEFCMYMQE KNPKFFYAMD FNEEHRLRNV FWVSSKGVDD YNYFSDVVSV DTTYVTAKYK 240 IPLVIIIGVN NHIQPTLLGC GLIADETLYT FVWLLQTWLI SMGGRAPRVI LTDQNSALKQ 300 AVAAVFPESR HCFALWNVLE KIPSKLEYVI RWQDNFVIKL NKCIYKSLTE EQFESRWSKL 360 LDRFTLREDE WVQSLYEDRR QWVPIFMRDI SFAGLSAPSR AESLNTWFDN YIDAYSSLRE 420 FIERYKLIVE DMHEEEAKAN FDGWHEIPDL KTPSPFEKQT LLVYTHEIFK KFQIEVLGAA 480 ACHLKKENDY GPIATYSVKD FADNQVFMVT WDQTKLDIGC SCRSFEYKGY VCRHAIVVLQ 540 MSGVFSIPFK YILQRWTNVA VSRHAMSDRL DEVQAKIRRF NELCRRAIIL GEEGSLSEQS 600 YNVALIAIED ALKQFKNTSS LDCDSRPHSA LRQAFSGNEE VNDGSTAAAV HEVPGTSLTS 660 SSKSQKRSDS GNKKFESYES MMGKVQPVQG LVNAGSQVGY AFMDNAHATS LIPNAPLVVQ 720 HNMAPVRLQS LPAHIQSTMP AQYHSSIPPC VEDKHIQDLK R*

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MESSEATGNV TSEPHRELEF ESHEDAYSYY KEYAKLVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IYNFVKDHNH ELLPEQAHFF  120
RSHRNVDSIK NDLRIRKRKI LAAGSKQFSA YRNVDFLDGY IRNQHDKGQI LSLESGDSQM  180
LLEFCMYMQE KNPKFFYAMD FNEEHRLRNV FWVSSKGVDD YNYFSDVVSV DTTYVTAKYK  240
IPLVIIIGVN NHIQPTLLGC GLIADETLYT FVWLLQTWLI SMGGRAPRVI LTDQNSALKQ  300
AVAAVFPESR HCFALWNVLE KIPSKLEYVI RWQDNFVIKL NKCIYKSLTE EQFESRWSKL  360
LDRFTLREDE WVQSLYEDRR QWVPIFMRDI SFAGLSAPSR AESLNTWFDN YIDAYSSLRE  420
FIERYKLIVE DMHEEEAKAN FDGWHEIPDL KTPSPFEKQT LLVYTHEIFK KFQIEVLGAA  480
ACHLKKENDY GPIATYSVKD FADNQVFMVT WDQTKLDIGC SCRSFEYKGY VCRHAIVVLQ  540
MSGVFSIPFK YILQRWTNVA VSRHAMSDRL DEVQAKIRRF NELCRRAIIL GEEGSLSEQS  600
YNVALIAIED ALKQFKNTSS LDCDSRPHSA LRQAFSGNEE VNDGSTAAAV HEVPGTSLTS  660
SSKSQKRSDS GNKKFESYES MMGKVQPVQG LVNAGSQVGY AFMDNAHATS LIPNAPLVVQ  720
HNMAPVRLQS LPAHIQSTMP AQYHSSIPPC VEDKHIQDLK R*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274627.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	F6GYH1	0.0	F6GYH1_VITVI; Uncharacterized protein
STRING	VIT_09s0054g01830.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Kalax.0674s0024.10.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]