PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0674s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 333aa    MW: 37214.6 Da    PI: 6.5047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0674s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-152976148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l+ +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Kalax.0674s0006.1.p 29 KGLWSPEEDDKLISYMLRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 76
                         678*******************************************97 PP
2Myb_DNA-binding537.8e-1782125146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++ E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
  Kalax.0674s0006.1.p  82 RGAFSPHEEELIVQLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 125
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-222379IPR009057Homeodomain-like
PROSITE profilePS5129415.7932476IPR017930Myb domain
SuperFamilySSF466895.08E-2827123IPR009057Homeodomain-like
SMARTSM007174.4E-112878IPR001005SANT/Myb domain
PfamPF002495.9E-142976IPR001005SANT/Myb domain
CDDcd001671.99E-93276No hitNo description
PROSITE profilePS5129423.85677131IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2580130IPR009057Homeodomain-like
SMARTSM007177.5E-1681129IPR001005SANT/Myb domain
PfamPF002499.5E-1582125IPR001005SANT/Myb domain
CDDcd001672.38E-1184124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRKPAVDYSS FTPSSSSSSV KTGNGKLRKG LWSPEEDDKL ISYMLRNGQG CWSDVARNAG  60
LQRCGKSCRL RWINYLRPDL KRGAFSPHEE ELIVQLHSLL GNRWSQIAAR LPGRTDNEIK  120
NFWNSTIKKR PKNNALLSNT ILPSPSNDQF SLGLMYMQQN HQHHLIHQSS NNNIFMAPAD  180
AATCSYMDHS SSSGSSSSPS MVLNHMNTNP TSLLMSCDML LDDQSLVDIY SFGDGLVEQY  240
FPPLETIVTS SNTSMSFNDN NNILEAGVNK VGHHQQRHIM EAADRYSCGS DVQEKLSCDS  300
FGETNIRLGE WDLEELMRSS ETAYSVPHID LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-282113019127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982095.13e-78PREDICTED: transcription factor MYB46
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.16e-67myb domain protein 46