PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0673s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 323aa    MW: 35840.6 Da    PI: 6.6165
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0673s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS180.11.6e-55753052206
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaal..... 81 
                           +lL++cAe  s++d+++a++lLa l e++spdgd+++Rl+++f++A++ rl+ + +++ + +pp   s  +     +      +     
  Kalax.0673s0001.1.p  75 LQLLIKCAELTSQSDFSAAHRLLALLLERSSPDGDSNERLVHHFAKAISYRLNYTNPTMNNFIPPFIHSYPSsaispV------Vtanns 158
                          689***************************************************999999999776665333243331......123466 PP

                 GRAS  82 .................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTg 146
                                            ++++++P+++f hltaNqaIleav+ge+ +Hi+Dfdi+qG+QWp ++qaL++R         ++pp+lRiTg
  Kalax.0673s0001.1.p 159 htldhppsdalihhstyLTLNKITPFIRFIHLTANQAILEAVDGETNIHILDFDIMQGFQWPLFMQALSERYsssaspnhHPPPMLRITG 248
                          6788999998888876555****************************************************9665555555599****** PP

                 GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrvkpgEalaVnl 206
                           g+    + + l +tgerL kfA++l+++f+f++l+ ++++dl+  l  L + p+++la+n+
  Kalax.0673s0001.1.p 249 TGH----DLDVLMRTGERLLKFAQSLNLRFQFHPLLLHHTADLSslLAPL-LLPDDTLAINF 305
                          ***....****************************777666662112333.56799999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.34848322IPR005202Transcription factor GRAS
PfamPF035145.5E-5375305IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MMGSVSSEDQ EAHPSSSSSS DLAHHHFLQL TLPPPPPPPP PPLSLSSALS LTSSSTPSFQ  60
YQNFNSLPAT TPQMLQLLIK CAELTSQSDF SAAHRLLALL LERSSPDGDS NERLVHHFAK  120
AISYRLNYTN PTMNNFIPPF IHSYPSSAIS PVVTANNSHT LDHPPSDALI HHSTYLTLNK  180
ITPFIRFIHL TANQAILEAV DGETNIHILD FDIMQGFQWP LFMQALSERY SSSASPNHHP  240
PPMLRITGTG HDLDVLMRTG ERLLKFAQSL NLRFQFHPLL LHHTADLSSL LAPLLLPDDT  300
LAINFGEILY KGHNYHQTFH YT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-288027924194Protein SCARECROW
5b3h_D7e-288027924194Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021635812.11e-72scarecrow-like protein 18
TrEMBLA0A2C9W0C45e-69A0A2C9W0C4_MANES; Uncharacterized protein
STRINGcassava4.1_022511m9e-70(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-39GRAS family protein