PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0672s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 459aa    MW: 50247.5 Da    PI: 6.682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0672s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-13312358455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kalax.0672s0008.1.p 312 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 358
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-3451218IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474598.51E-19306373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.187308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-14311362No hitNo description
Gene3DG3DSA:4.10.280.102.9E-17312371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGDKFWVSDE ERAAVEAVVG AEACQFLISP GSESGFSELA ISSSRGDSSA RHALSRLVAG  60
DSDWNYSILW RGSRTRGNGS ALVWGEGHCG GAVAGNPSLS EDEKLRIERV VRLIQKRFGK  120
SFDQRCLVSN LEMFYLVSMC YSFSSGSVYG PVQVYEHGRA VWAVENCAAQ YESRWHLAKL  180
AGLKTVAFVP VKAGVVEIGS VASIPEEKKV LRMIEGLFGS SDLVQSKIFG QDLSLSASNS  240
RSMNISFSPK VEEELGLGSE EGGIGVSHFY GSSVNGRAGS LGFEQFKDEE GDDRKPRKRG  300
RKPANGREQA LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA ISYITDLQSK  360
IRILENEKDA PNVDKQSVAE FEFQERQDDA IVRVGYPLDA HPVSGVIKTL RENQITPSPE  420
LCDVSITDNG KVVHTFSIRN HGAAAEHVKE KLLDALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27306368264Transcription factor MYC2
5gnj_B2e-27306368264Transcription factor MYC2
5gnj_E2e-27306368264Transcription factor MYC2
5gnj_F2e-27306368264Transcription factor MYC2
5gnj_G2e-27306368264Transcription factor MYC2
5gnj_I2e-27306368264Transcription factor MYC2
5gnj_M2e-27306368264Transcription factor MYC2
5gnj_N2e-27306368264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293301RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050374.21e-152PREDICTED: transcription factor bHLH3
RefseqXP_017969531.11e-152PREDICTED: transcription factor bHLH3
RefseqXP_017969532.11e-152PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-138MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A1R3I7931e-147A0A1R3I793_COCAP; Uncharacterized protein
TrEMBLA0A343IVG01e-147A0A343IVG0_HEVBR; LMYC14
STRINGXP_006479569.11e-146(Citrus sinensis)
STRINGXP_006443887.11e-146(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-116bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]