PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0669s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 274aa    MW: 31489.6 Da    PI: 9.7326
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0669s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-314696151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Kalax.0669s0021.1.p 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 96
                         79***********************************************95 PP
2K-box88.11.7e-291132103100
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +s++ s++ea+++++ qe+akL+++i nLq+++R++lGe+L+  + ++L++ e++Le+s++kiR++Knell  ++e++qkke +l+++n+
  Kalax.0669s0021.1.p 113 SSNTGSVSEANTQYYLQEAAKLRQQIANLQNTNRNFLGESLSLNNTRDLKSQEKKLEESIRKIRARKNELLSLELENMQKKEIDLHNINQ 202
                          3445559*********************************************************************************** PP

                K-box  93 aLrkklee 100
                          +Lr+++ e
  Kalax.0669s0021.1.p 203 YLRARISE 210
                          ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-413897IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6413898IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-3339111IPR002100Transcription factor, MADS-box
CDDcd002655.78E-4439115No hitNo description
PRINTSPR004048.2E-334060IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004094IPR002100Transcription factor, MADS-box
PfamPF003191.1E-264794IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-336075IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-337596IPR002100Transcription factor, MADS-box
PfamPF014865.3E-21122208IPR002487Transcription factor, K-box
PROSITE profilePS5129713.997124214IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFHFLHQIWV DMEFKHIGES SSRRGEQLSD TESPQRKIGR GKIEIKRIEN TTNRQVTFCK  60
RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYSNNSVK ATIEKYKKAC SDSSNTGSVS  120
EANTQYYLQE AAKLRQQIAN LQNTNRNFLG ESLSLNNTRD LKSQEKKLEE SIRKIRARKN  180
ELLSLELENM QKKEIDLHNI NQYLRARISE NERAQQQMSL MPPPPPPASG VGTSFEQLLP  240
STQFDSRSYF EVNALQPNQV AYPRQDQMPL QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-2038106169Myocyte-specific enhancer factor 2B
1tqe_Q3e-2038106169Myocyte-specific enhancer factor 2B
1tqe_R3e-2038106169Myocyte-specific enhancer factor 2B
1tqe_S3e-2038106169Myocyte-specific enhancer factor 2B
6c9l_A3e-2038106169Myocyte-specific enhancer factor 2B
6c9l_B3e-2038106169Myocyte-specific enhancer factor 2B
6c9l_C3e-2038106169Myocyte-specific enhancer factor 2B
6c9l_D3e-2038106169Myocyte-specific enhancer factor 2B
6c9l_E3e-2038106169Myocyte-specific enhancer factor 2B
6c9l_F3e-2038106169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062146.11e-121floral homeotic protein AGAMOUS-like
SwissprotQ408851e-120AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A068CLH31e-119A0A068CLH3_CAMSI; AGAMOUS-like protein
STRINGPGSC0003DMT4000731341e-119(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]