PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0667s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 379aa    MW: 42276.7 Da    PI: 7.5259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0667s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-1371119148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W +eEd  l+ ++  +G+g +W + ++++g++R++k+c++rw++yl
  Kalax.0667s0003.1.p  71 KGPWAPEEDAMLKAYIDAHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 119
                          79*********************************************97 PP
2Myb_DNA-binding35.13.1e-11127168346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++ eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0667s0003.1.p 127 GFSDEEDNVICSLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 168
                          699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.24366119IPR017930Myb domain
SMARTSM007178.1E-1070121IPR001005SANT/Myb domain
SuperFamilySSF466895.85E-2470166IPR009057Homeodomain-like
PfamPF002492.1E-1271119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2272126IPR009057Homeodomain-like
CDDcd001672.91E-673119No hitNo description
PROSITE profilePS5129419.904120174IPR017930Myb domain
SMARTSM007175.8E-10124172IPR001005SANT/Myb domain
PfamPF002491.3E-9126168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-22127174IPR009057Homeodomain-like
CDDcd001678.17E-7128170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMKTQAHESK ILRVMQGQAE DCSLTSAPNL PLMALSQSAS TLLEYLYTRE QVLLKIDMGR  60
APCCDKTLVK KGPWAPEEDA MLKAYIDAHG TGGNWIALPQ KIGLRRCGKS CRLRWLNYLR  120
PNIKHGGFSD EEDNVICSLY ISIGSRWSVI AAQLPGRTDN DIKNYWNTKL KKKLLGRRKQ  180
SNNIVSSSSS TMEDTKDGMS DETQRLSNSA LERLQLHIQL QTRPRTLNSV NGPTAHWPKL  240
LHPAQERMIR SLTASQNDIN TPHQHELDKL AECLGNSGSQ IESTRQGLEQ LTSTPSSLSG  300
LQLQAEFENY MKSNSEIIAG KGDEERKELD GSFWWSGEME NKSSASISSN SWDDSYSVIN  360
SAGGNLMMFH DYGLGYNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21711747108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070210.11e-110transcription factor MYB36-like
SwissprotQ9FKL22e-95MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A067FGW61e-107A0A067FGW6_CITSI; Uncharacterized protein
TrEMBLA0A068U3621e-108A0A068U362_COFCA; Uncharacterized protein
STRINGXP_006474624.11e-108(Citrus sinensis)
STRINGXP_006453430.11e-108(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-90myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]