PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0667s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 347aa    MW: 38120.3 Da    PI: 7.3807
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0667s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32e-052970441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
                         + C  +++  ++lfC+  + ++C +C  ++H      H +vp
  Kalax.0667s0002.1.p 29 KLCHSCNSAAAKLFCRRHSAFFCLNCDANIHLFtsasHHRVP 70
                         57*****************************65667777666 PP
2zf-B_box25.72.4e-0868114242
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                          + ++C+ +e  ++   C+ +   lC+ C + +H +       H++vp+
  Kalax.0667s0002.1.p  68 RVPVCDVCEGAPAAVTCKADAASLCALCDQDIH-SvnplsrrHERVPI 114
                          5789*****************************.44888888999987 PP
3CCT712.8e-24292335144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ 
  Kalax.0667s0002.1.p 292 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRG 335
                          9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0832663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3382671IPR000315B-box-type zinc finger
CDDcd000215.15E-63071No hitNo description
SMARTSM003368.8E-1667114IPR000315B-box-type zinc finger
PROSITE profilePS5011910.53767114IPR000315B-box-type zinc finger
PfamPF006437.4E-769114IPR000315B-box-type zinc finger
CDDcd000214.64E-870114No hitNo description
PfamPF062032.8E-18292334IPR010402CCT domain
PROSITE profilePS5101716.638292334IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MQMAGEEEES NAHGVTVSWP IVPPRAASKL CHSCNSAAAK LFCRRHSAFF CLNCDANIHL  60
FTSASHHRVP VCDVCEGAPA AVTCKADAAS LCALCDQDIH SVNPLSRRHE RVPIAPLQVH  120
QPAPNKSAPP APIVICGFDV SDFLVPTAEE EILWMNLNHN SKLALCPSEV KSEDVIFPDF  180
DPLDDFDLPD PVSYGDFKHE TISYSDNVVP TDHCYISTGS PIANFEALDA SFRVPKLLLM  240
HVQPPAKTTH SPIHLTVVSD HHSSLTTSVG GGGDFAKNVP VPATRQISAT EREARVLRYK  300
EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRGDSNVF SNLLTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-63CONSTANS-like 3