PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0666s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 356aa    MW: 39814.4 Da    PI: 7.1626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0666s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.9e-193680146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g WT+eEde l +av+ + g++Wk+Ia+++g gRt+ qc +rwqk
  Kalax.0666s0008.1.p 36 KGQWTAEEDETLRKAVEHYNGKSWKKIAECLG-GRTDVQCLHRWQK 80
                         799*****************************.************8 PP
2Myb_DNA-binding35.72e-1180120748
                          HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           Ed++++++v + G   W+ Ia+++  gR +kqc++rw+ +l
  Kalax.0666s0008.1.p  80 KEDKKIIELVGKNGATKWTNIAKHLT-GRIGKQCRERWYHHL 120
                          6************************9.************886 PP
3Myb_DNA-binding48.52e-15126168145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
  Kalax.0666s0008.1.p 126 KENWTQEEELTLIHAHRIYGNK-WAELTKFLP-GRSDNAIKNHWN 168
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.1843186IPR017930Myb domain
SuperFamilySSF466891.44E-143280IPR009057Homeodomain-like
SMARTSM007172.0E-143584IPR001005SANT/Myb domain
PfamPF002498.5E-173680IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-163679IPR009057Homeodomain-like
CDDcd001671.46E-133980No hitNo description
CDDcd001671.03E-977120No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2180128IPR009057Homeodomain-like
SMARTSM007170.4885122IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-26100175IPR009057Homeodomain-like
PROSITE profilePS5129423.629121175IPR017930Myb domain
SMARTSM007172.5E-14125173IPR001005SANT/Myb domain
PfamPF002491.1E-13126169IPR001005SANT/Myb domain
CDDcd001671.20E-10128168No hitNo description
Gene3DG3DSA:1.10.10.607.9E-20129174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MATGREVAIS EGGSSDGSSK KRPANRVSGP SRRSTKGQWT AEEDETLRKA VEHYNGKSWK  60
KIAECLGGRT DVQCLHRWQK EDKKIIELVG KNGATKWTNI AKHLTGRIGK QCRERWYHHL  120
DPAIKKENWT QEEELTLIHA HRIYGNKWAE LTKFLPGRSD NAIKNHWNSS VKKKEESFMA  180
AGLLSNFPGV PDFGQQKFSV AFSSTQQTSG ENSHMRGGSE EDGVSECSQA STTLGCSQTS  240
NDLTIKVESL NPIQECHKNS LVDGNHSLSC NVGLDEIGDP MLSQSSHIQI SQANETSDLP  300
SNDPASDYLD IPSFEHLFYD EPNQFNVFMP WQNPQINPNV VLQWKFSQLL SMVRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-52361746158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-52361746158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049083.13e-98PREDICTED: myb-related protein 3R-1 isoform X1
RefseqXP_018726739.13e-98PREDICTED: myb-related protein 3R-1 isoform X2
SwissprotQ9S7G74e-84MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A059CTK76e-97A0A059CTK7_EUCGR; Uncharacterized protein
STRINGXP_010049083.11e-97(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-86Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]