PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0656s0003.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 272aa    MW: 29819.4 Da    PI: 9.6476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0656s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2066115255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Kalax.0656s0003.2.p  66 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDNAALRFKG 115
                          7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-3365124IPR001471AP2/ERF domain
PROSITE profilePS5103224.68466123IPR001471AP2/ERF domain
CDDcd000181.10E-3266124No hitNo description
PfamPF008473.8E-1366115IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2266124IPR016177DNA-binding domain
SMARTSM003802.3E-3866129IPR001471AP2/ERF domain
PRINTSPR003671.1E-116778IPR001471AP2/ERF domain
PRINTSPR003671.1E-1189105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSSRMITLTQ VMATNNNSQT APSSQGSNAA AAASAAAPRF TVTQDHASPR HSAQDQQDSS  60
AVRKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE DAAIAYDNAA LRFKGTKAKL  120
NFPERVQGGN NPTTTHYTNH NVERSSRNTH TPHQQIMQRP LGPHPQQQPP QQPSAVAYPH  180
LDEYAQILAS NEVEFPLYSS NLLNQQQAGQ FQGSHSSSSS SSMFGSSGYS DNSLLQQQQQ  240
QQQQQFGYYP QWYGGSSGPS DFPGHGNDFS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2663129269ATERF1
3gcc_A2e-2663129269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044889.17e-55PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLA0A059D8V92e-53A0A059D8V9_EUCGR; Uncharacterized protein
TrEMBLA0A2N9IST08e-54A0A2N9IST0_FAGSY; Uncharacterized protein
STRINGXP_010044889.13e-54(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-33related to AP2 6l