PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0650s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 35252.2 Da PI: 5.4994 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 107 | 157 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp r r +lg++ taeeAa +++a+ +++g Kalax.0650s0012.1.p 107 KKYRGVRQRP-WGKWAAEIRDPQ----RrVRLWLGTYNTAEEAAMVYDNAAIQFRG 157 59********.**********93....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.93E-32 | 107 | 164 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-22 | 108 | 165 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-37 | 108 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.21 | 108 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 108 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MFNQVKYTEH KEASTVVLHY RLASPDLPKL LRISLTDSYA TDSSSDDDDQ LQRSLARRLR 60 VKKYVHEVSI KAPSGAPVEN TNETSRPSRC RKLTGKPVYQ PSRRIEKKYR GVRQRPWGKW 120 AAEIRDPQRR VRLWLGTYNT AEEAAMVYDN AAIQFRGPDA LTNFSSHPTP LQEVEFSKKF 180 DSIAATSSKD SLSPRVCSPT SVLRFQSEEA ESQLSSYAET QEEDKGKKGI SSGFTECDSF 240 LYPNDAFHLD FFPEPRVAND TSFLSQDFGE EDYLFPEPGF GYGPASSKWV LDEFFQQDIG 300 DLFGSDPLLA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-19 | 107 | 164 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-19 | 107 | 164 | 4 | 62 | ATERF1 |
3gcc_A | 3e-19 | 107 | 164 | 4 | 62 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-51 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0650s0012.1.p |