PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0641s0002.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 393aa    MW: 43552.4 Da    PI: 5.6415
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0641s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.49.8e-14740134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C +Cg+ +TplWR+gp  ++ LCnaCG ++r kg
  Kalax.0641s0002.2.p  7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKG 40
                         99**************55555**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-7155IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.18E-10545No hitNo description
CDDcd002028.05E-14654No hitNo description
Gene3DG3DSA:3.30.50.107.4E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.976740IPR000679Zinc finger, GATA-type
PfamPF003201.4E-11740IPR000679Zinc finger, GATA-type
PfamPF139199.7E-7275355IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYAPLHS RAEPDNFGDH  60
KELRIKITYG RDKEDICPKR KQTNENAMTG SISSNYNDIF WKAMDDDTSN RSSSGSAISN  120
SESCAQFGTT YFNEFTGPAQ VVMADRTKPA KKRTCIPRPR SSSIAALTKD LCTILHQQQS  180
SGFSVSSEED LLFESDKSIF SAETGHGSYL IRDTSSMTRE EDSEASSFSV NNKPYLGSET  240
SFYPKPLPVH TSSIKGVADD IMSNNPTRHH EKTEERNSEE SEISEILGSQ SSALTTINLK  300
DVFNHEEFLR HLTDEEQGQV LKCLPYVDDS RLSSCLQSLF DSFSTFQKLI TEELFGASLP  360
GITSDDCDTF NRLAFCNLLK SKSVELFNVM KV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031967.11e-133PREDICTED: GATA transcription factor 26-like
TrEMBLB9N2W61e-132B9N2W6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.11e-132(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-84GATA transcription factor 26