PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0641s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 512aa MW: 56398.7 Da PI: 5.0054

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0641s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	41.9	1.4e-13	7	40	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ +TplWR+gp ++ LCnaCG ++r kg Kalax.0641s0002.1.p 7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKG 40 99************55555********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.6E-7	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.18E-10	5	45	No hit	No description
CDD	cd00202	1.57E-13	6	54	No hit	No description
Pfam	PF00320	2.0E-11	7	40	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.976	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.0E-10	7	41	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF13919	1.5E-6	275	355	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYAPLHS RAEPDNFGDH 60 KELRIKITYG RDKEDICPKR KQTNENAMTG SISSNYNDIF WKAMDDDTSN RSSSGSAISN 120 SESCAQFGTT YFNEFTGPAQ VVMADRTKPA KKRTCIPRPR SSSIAALTKD LCTILHQQQS 180 SGFSVSSEED LLFESDKSIF SAETGHGSYL IRDTSSMTRE EDSEASSFSV NNKPYLGSET 240 SFYPKPLPVH TSSIKGVADD IMSNNPTRHH EKTEERNSEE SEISEILGSQ SSALTTINLK 300 DVFNHEEFLR HLTDEEQGQV LKCLPYVDDS RLSSCLQSLF DSFSTFQKLI TEELFGASLP 360 GITSDDCDTF NRLAFCNLLK SKSVELFNVM KKCKHSAAAT RAYPETKTLM KIPNTAPSPV 420 CKEKTEADDI DNDSACSSQK NLLALPADSN PYMLDPLSYS DENCDQDLLL DMPSSNSFPD 480 AELIFSAPSF GIPHDRLGSC SCSAYPNFIG Q*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYAPLHS RAEPDNFGDH  60
KELRIKITYG RDKEDICPKR KQTNENAMTG SISSNYNDIF WKAMDDDTSN RSSSGSAISN  120
SESCAQFGTT YFNEFTGPAQ VVMADRTKPA KKRTCIPRPR SSSIAALTKD LCTILHQQQS  180
SGFSVSSEED LLFESDKSIF SAETGHGSYL IRDTSSMTRE EDSEASSFSV NNKPYLGSET  240
SFYPKPLPVH TSSIKGVADD IMSNNPTRHH EKTEERNSEE SEISEILGSQ SSALTTINLK  300
DVFNHEEFLR HLTDEEQGQV LKCLPYVDDS RLSSCLQSLF DSFSTFQKLI TEELFGASLP  360
GITSDDCDTF NRLAFCNLLK SKSVELFNVM KKCKHSAAAT RAYPETKTLM KIPNTAPSPV  420
CKEKTEADDI DNDSACSSQK NLLALPADSN PYMLDPLSYS DENCDQDLLL DMPSSNSFPD  480
AELIFSAPSF GIPHDRLGSC SCSAYPNFIG Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031967.1	1e-157	PREDICTED: GATA transcription factor 26-like
TrEMBL	A9PFA9	1e-155	A9PFA9_POPTR; Uncharacterized protein
STRING	POPTR_0003s08080.1	1e-156	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-85	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Kalax.0641s0002.1.p