PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0639s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 657aa    MW: 72252.8 Da    PI: 5.3152
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0639s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.77.3e-852916543373
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel..ykalppsetsekn......sseelaalklf 84 
                          e++++ Ae +s+g+l laq +Larl+++ sp g+p+qR+a yf+e L+  l+ s+++l   +a+++s++ + +       + +l a+k f
  Kalax.0639s0002.1.p 291 EQIFKSAELLSTGNLVLAQGILARLNHQLSPIGKPLQRVAYYFKESLQLLLLLSSNNLdvNSAVTASTALS-SfspplsLILKLGAFKSF 379
                          689999******************************************99887555541144444443332.24677778888899999* PP

                 GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172
                          se+sP+++f+++t+NqaIleave ++r+H+iDfdi++G+QW++++q+La R+  +g  sl+iT+++   s +  el  ++e L+ fAeel
  Kalax.0639s0002.1.p 380 SEISPVVQFANFTCNQAILEAVEMHDRIHVIDFDIGYGGQWASFMQELALRNssGGVISLKITAFVL--SYDDIELGLIQESLRLFAEEL 467
                          ****************************************************767778*********..5599***************** PP

                 GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          +v+++ +++    ++ l+  +  v  gEa+aVnl + + +     ++l+     vL+ +k+lsPk+vv  e+ +d+ + +F++ +++a+e
  Kalax.0639s0002.1.p 468 NVDLDVKIF---GFDLLNSVSHYVGDGEAVAVNLPIGILYNC--GLPLPF----VLRSIKQLSPKIVVTLERGCDRYDLPFAHNMIQAVE 548
                          ********8...999999999999************877665..566666....************************************ PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           ys l++sl+a    +s+  +k+Er++++++i+ +v ++ +     + t   Wr  + ++ F+p+ ls+++++q ++l+++++++g+++e
  Kalax.0639s0002.1.p 549 SYSNLLESLDAV-NGNSDIVQKMERFMIHPAIERLVLQRFRV----QDTSPPWRTFFISSSFTPLLLSNFNESQGECLVQRTPVRGFHLE 633
                          *********887.68999******************987776....8899**************************************** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                          +++ slvl+W++++L+s++aW
  Kalax.0639s0002.1.p 634 KKRSSLVLCWQQKELISATAW 654
                          ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.23263635IPR005202Transcription factor GRAS
PfamPF035142.5E-82291654IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MPLPFDFQGK PNLQQQHQLL GFFPQDLTAT EQQLQWSHAK AEEAALSGYV GREPTSVLDP  60
RRSPSPPHSS ATLSSSLGSS ANGGGGRNYN VEFDQSMFGF ILNDNSDARI DDPSGLGKLI  120
SAAPVTLSDL DSLGAIYHHP QHQTGDEFGA FSGNLQESGF GSGQGSIFGQ LGNNIVGNSS  180
IESLFNQQQQ LQHQTIKSLI SHHQPSQNPS PFLPGGFSDQ PIFYLPNPKR LNTRPALDSE  240
QQNQIEKNQF LAQNQLQMQA SMMPASAACK KMLQSDGTVE EMGLQQQALF EQIFKSAELL  300
STGNLVLAQG ILARLNHQLS PIGKPLQRVA YYFKESLQLL LLLSSNNLDV NSAVTASTAL  360
SSFSPPLSLI LKLGAFKSFS EISPVVQFAN FTCNQAILEA VEMHDRIHVI DFDIGYGGQW  420
ASFMQELALR NSSGGVISLK ITAFVLSYDD IELGLIQESL RLFAEELNVD LDVKIFGFDL  480
LNSVSHYVGD GEAVAVNLPI GILYNCGLPL PFVLRSIKQL SPKIVVTLER GCDRYDLPFA  540
HNMIQAVESY SNLLESLDAV NGNSDIVQKM ERFMIHPAIE RLVLQRFRVQ DTSPPWRTFF  600
ISSSFTPLLL SNFNESQGEC LVQRTPVRGF HLEKKRSSLV LCWQQKELIS ATAWGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2729565425378Protein SCARECROW
5b3h_A1e-2729565424377Protein SCARECROW
5b3h_D1e-2729565424377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661679.11e-163PREDICTED: scarecrow-like protein 27
TrEMBLA0A438GXI91e-162A0A438GXI9_VITVI; Scarecrow-like protein 6
STRINGVIT_15s0048g00270.t011e-161(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-112GRAS family protein