PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0637s0007.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YB

Protein Properties

Length: 177aa MW: 19022.2 Da PI: 6.1196

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0637s0007.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.6	6.8e-57	27	124	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisfvtseasdkc +ekrkt+ngddllwa++tlGfedy++pl++yl++y Kalax.0637s0007.3.p 27 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCLKEKRKTVNGDDLLWAMGTLGFEDYIDPLRLYLNQY 116 69************************************************************************************** PP NF-YB 91 relegekk 98 re+eg++k Kalax.0637s0007.3.p 117 REIEGDTK 124 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.4E-53	23	139	IPR009072	Histone-fold
SuperFamily	SSF47113	2.25E-40	30	149	IPR009072	Histone-fold
Pfam	PF00808	9.9E-28	33	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-18	61	79	No hit	No description
PROSITE pattern	PS00685	0	64	80	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.5E-18	80	98	No hit	No description
PRINTS	PR00615	1.5E-18	99	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAEAPASPGG GGSHDSGGDH SPRSNNVREQ DRFLPIANIS RIMKKALPAN GKIAKDAKET 60 VQECVSEFIS FVTSEASDKC LKEKRKTVNG DDLLWAMGTL GFEDYIDPLR LYLNQYREIE 120 GDTKGTAKGG DASAKKDTGV HPQESNVLAS QGSYSQGMNY VNSRGQHMIV PMQGSE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-46	26	118	1	93	NF-YB
4awl_B	1e-46	26	118	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-46	26	118	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620316.1	1e-100	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X4
Refseq	XP_016449854.1	1e-100	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
Swissprot	Q8VYK4	5e-84	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3YCJ2	8e-99	A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRING	XP_009620316.1	1e-99	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-78	nuclear factor Y, subunit B10

Link Out ? help Back to Top
Phytozome	Kalax.0637s0007.3.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]