PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0636s0017.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 446aa    MW: 48263 Da    PI: 8.9124
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0636s0017.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.13.1e-2382126145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e 
  Kalax.0636s0017.2.p  82 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 126
                          79****************************************986 PP
2QLQ51.72.7e-181146237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                          FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k
  Kalax.0636s0017.2.p 11 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 46
                         6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-101046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.4771146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.0E-131244IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.91182126IPR014977WRC domain
PfamPF088791.7E-1983125IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MHAPFAGARQ LFTQNQWFEL EQQALIYKYI AANVSVPSNL IIPIKKSFNP WGLPASISPN  60
GSLSSSSFGW GPFHLGFHGS TDPEPGRCRR TDGKKWRCAK DAVHGHKYCE KHLNRGRHRS  120
RKPVEGQKPD QSVAGAANFA NKVAPMASSL SKASVMPGGR SANGLAAKGA HSTLNPSTDL  180
ITKRTQDLQG ISMLSPAISL GSKDASFAIP KPKDPFEESY QSEFGFVSSD YLQNPYQKIS  240
SCLNSSFVDF SDQDSRDQHQ LRQFMEDWPK ERSEHSSLTW QDEIKPDWTK LSMSIPVVSS  300
GFSSSASSPT HERLALSPLR LGLEFHQNEM GANEFGEPFH KDPAYMPWGS SAGGPLGEVL  360
KISSSKRPHV ENPSGLNLMT KGWDGAKAQF EPSPTGVLLK SAFGSLSNSS AGSSPRGESR  420
MTSEAGSLCN EAPGSTTLVS SLPFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890408.11e-147growth-regulating factor 1 isoform X1
TrEMBLA0A438FBN51e-139A0A438FBN5_VITVI; Growth-regulating factor 1
TrEMBLA0A438KQ721e-139A0A438KQ72_VITVI; Growth-regulating factor 1
TrEMBLA5CAY71e-140A5CAY7_VITVI; Uncharacterized protein
STRINGVIT_00s0494g00010.t011e-140(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.16e-69growth-regulating factor 2