PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0636s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 578aa MW: 61580.7 Da PI: 8.1035 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.7 | 4.3e-23 | 214 | 258 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e Kalax.0636s0017.1.p 214 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 258 79****************************************985 PP | |||||||
2 | QLQ | 51.2 | 3.7e-18 | 143 | 178 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k Kalax.0636s0017.1.p 143 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 178 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.6E-10 | 142 | 178 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.477 | 143 | 178 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.9E-13 | 144 | 176 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.911 | 214 | 258 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.4E-19 | 215 | 257 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MLHGGAVEAA AAGVMDFGTK PKSDRPESAK RERSEDGQVG GGGQRRAKAA GKGGVDAMLL 60 MSSSAGGVVE GQLGSGSLVF EDERNMLSFS SPGGAEDEKM GHNAALQLCY PQSVCSRTSG 120 EFGLGGSLTS PNMHAPFAGA RQLFTQNQWF ELEQQALIYK YIAANVSVPS NLIIPIKKSF 180 NPWGLPASIS PNGSLSSSSF GWGPFHLGFH GSTDPEPGRC RRTDGKKWRC AKDAVHGHKY 240 CEKHLNRGRH RSRKPVEGQK PDQSVAGAAN FANKVAPMAS SLSKASVMPG GRSANGLAAK 300 GAHSTLNPST DLITKRTQDL QGISMLSPAI SLGSKDASFA IPKPKDPFEE SYQSEFGFVS 360 SDYLQNPYQK ISSCLNSSFV DFSDQDSRDQ HQLRQFMEDW PKERSEHSSL TWQDEIKPDW 420 TKLSMSIPVV SSGFSSSASS PTHERLALSP LRLGLEFHQN EMGANEFGEP FHKDPAYMPW 480 GSSAGGPLGE VLKISSSKRP HVENPSGLNL MTKGWDGAKA QFEPSPTGVL LKSAFGSLSN 540 SSAGSSPRGE SRMTSEAGSL CNEAPGSTTL VSSLPFS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890408.1 | 1e-148 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A438FBN5 | 1e-142 | A0A438FBN5_VITVI; Growth-regulating factor 1 | ||||
TrEMBL | A0A438KQ72 | 1e-142 | A0A438KQ72_VITVI; Growth-regulating factor 1 | ||||
STRING | VIT_00s0494g00010.t01 | 1e-142 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-73 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0636s0017.1.p |