PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0635s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 180aa MW: 19644.2 Da PI: 6.6025 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 7.2e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e ++lfC ++ lC++C ++ H Kalax.0635s0018.1.p 3 TICDVCEGAAAILFCAADEAALCQSCDDKVH 33 68******99******************998 PP | |||||||
2 | zf-B_box | 28 | 4.6e-09 | 54 | 91 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 +C+ +e+ ++ ++Ce +++ lC +C + H g H Kalax.0635s0018.1.p 54 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrkH 91 69**************************9996545556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.2E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.997 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-6 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.399 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-7 | 54 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.79E-7 | 55 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRTICDVCEG AAAILFCAAD EAALCQSCDD KVHMCNKLAS RHVRVRLAAP SAVARCDICE 60 NAPAFFYCEV DGTSLCLQCD MIVHVGGKRK HGRYLILRQK VEFPGGKPGQ LEDPASQPLD 120 TGESNEGSKN ATRDNQQNHE SSPMPIIDSN GDSNAKRDTK MIDLNMKPQR MHEQASNHQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023922129.1 | 4e-97 | B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 6e-74 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1R3GG33 | 1e-93 | A0A1R3GG33_COCAP; Zinc finger, B-box | ||||
TrEMBL | A0A251NCH5 | 7e-94 | A0A251NCH5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241795.1 | 1e-94 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-76 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0635s0018.1.p |