PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0626s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 273aa MW: 30329 Da PI: 7.3646 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.5 | 5e-32 | 62 | 166 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae+h +g +++ l++ede gr W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ Kalax.0626s0001.1.p 62 FEKSLTPSDVGKLNRLVIPKQHAERHfplntsNGADSGGMLLSFEDEAGRFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFER 151 99***************************9995566799**************************************************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + ++ +l+++++r+ Kalax.0626s0001.1.p 152 HPTDPDRLFIGWRRR 166 87788889****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-39 | 55 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-30 | 61 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-28 | 61 | 155 | No hit | No description |
PROSITE profile | PS50863 | 14.339 | 62 | 167 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-29 | 62 | 166 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-23 | 62 | 167 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MADSTNSSPN SKSLVFAHHF QSFNLNNPND SEDDDGRRAE QIINGNCGGS QQQRHQQLEV 60 MFEKSLTPSD VGKLNRLVIP KQHAERHFPL NTSNGADSGG MLLSFEDEAG RFWRFRYSYW 120 NSSQSYVLTK GWSRYVKEKR LDAGDVVLFE RHPTDPDRLF IGWRRRHDPA HQSNSNAAAA 180 SVAGRGLSYS AHSAAYPAHQ YRPDSEASAG GAGVSQSKTE SFNGSSSTRT LRLFGVNMEY 240 QCESDQSEPA SPDGSSMSSP SRQVAYQRYY TQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-47 | 59 | 166 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024928202.1 | 2e-73 | B3 domain-containing protein At2g36080 isoform X1 | ||||
Refseq | XP_024928203.1 | 2e-73 | B3 domain-containing protein At2g36080 isoform X2 | ||||
Swissprot | Q8GYJ2 | 1e-63 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A438EK28 | 8e-70 | A0A438EK28_VITVI; B3 domain-containing protein | ||||
TrEMBL | F6HKN6 | 3e-70 | F6HKN6_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g02810.t01 | 4e-71 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 4e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0626s0001.1.p |
Publications ? help Back to Top | |||
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