PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0623s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 544aa    MW: 60368.7 Da    PI: 5.2626
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0623s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.51.4e-831745416374
                 GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetseknsseelaalkl......fsev 87 
                          + +Ae v+ +++e+a++lL++   l+++dg+++qR++ yf eAL++r+ r + +++ k l + ++      +ee+++++       f+  
  Kalax.0623s0006.1.p 174 FLAAEGVAFQQFERATRLLNHCDMLVAQDGSTVQRVVYYFSEALRERIDRISGNCSlKGLgKLQDF----NIEEAMIMSPnpfclsFHRQ 259
                          56899999******************************************5444440444233333....3333333322224448**** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          +P+ + ++++a q Ile v ++++vH+iDf+i+ G+QW   +qaLa+R   +   l+iT+v+     sk+++e tg+rLa+fA++l+++f
  Kalax.0623s0006.1.p 260 TPFSQACQFAAVQSILENVGHAKKVHVIDFGIKCGVQWTIPMQALATRGaVPLELLKITAVST---ASKQSVEDTGSRLANFAHSLNLTF 346
                          ************************************************9566679********...58********************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f++++++++ +l+ + ++++ +E+ a  + + l  +l+++  le+    ++++++s++P ++v++e eadhns+ F++rf+eal y+s+
  Kalax.0623s0006.1.p 347 AFSIVMVDDMLNLHEDLFELEDDEVAAMYVPFVLRAFLSKPDRLEH----MMSVIRSIQPCMIVMIEVEADHNSPAFANRFTEALFYFSS 432
                          *************************************966666666....**************************************** PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                           fd+l++ ++  + +r+ +E +++++ i+n++a+ega+r+ r  + e Wr+ + ++ + + +ls++   qa+l+l++++ +   ++e + 
  Kalax.0623s0006.1.p 433 YFDCLATCMGDSNPNRKIIESVYFSQGIRNIIATEGAARTIRSVKIEVWRAFFARFQLVETELSSSSLYQARLILKEFNcGSCCTLEMHG 522
                          *******************************************************************************9999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          +s++l W++ p++s+SaW+
  Kalax.0623s0006.1.p 523 KSFILEWNGTPIMSLSAWK 541
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.331143520IPR005202Transcription factor GRAS
PfamPF035144.7E-81174541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MEFYDSGTEN ENTGKGGTGI ISSAERRSAS QIGDCGDFGN VRMSGSSSCV KIFEEDIAST  60
ETISGGGIDI LEHEKERGQR SGFASLELLK NYGSGFKRLH REVISQPSLA PPCQKVVRED  120
LSTAEIFRVA GEMFIQSSSQ GVSDRSVGSH LTDFHFCSIS EEQIKDVQLA VSIFLAAEGV  180
AFQQFERATR LLNHCDMLVA QDGSTVQRVV YYFSEALRER IDRISGNCSL KGLGKLQDFN  240
IEEAMIMSPN PFCLSFHRQT PFSQACQFAA VQSILENVGH AKKVHVIDFG IKCGVQWTIP  300
MQALATRGAV PLELLKITAV STASKQSVED TGSRLANFAH SLNLTFAFSI VMVDDMLNLH  360
EDLFELEDDE VAAMYVPFVL RAFLSKPDRL EHMMSVIRSI QPCMIVMIEV EADHNSPAFA  420
NRFTEALFYF SSYFDCLATC MGDSNPNRKI IESVYFSQGI RNIIATEGAA RTIRSVKIEV  480
WRAFFARFQL VETELSSSSL YQARLILKEF NCGSCCTLEM HGKSFILEWN GTPIMSLSAW  540
KFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3420354137375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811562.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DWN40.0A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
STRINGevm.model.supercontig_9.721e-177(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-49RGA-like protein 3