PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0623s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 537aa    MW: 60682.2 Da    PI: 8.2066
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0623s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.42.7e-8616953410374
                 GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfsh 95 
                          + v+ +++++a++lL+    l+s +g+++qRl+ yf eAL++r+ r+  + +++   s++++ +++++  + +      +   P+ +  h
  Kalax.0623s0005.1.p 169 QSVALEQFARATKLLNYCDLLSSCNGNTVQRLVRYFSEALRERIDRQRGRNFSSQGLSKQPKIDVKDASVSCHPviltCHRKIPFTRTLH 258
                          56788999**************************************6555555554444444443333333222344588999******* PP

                 GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                          l+  qaI e v+ ++rvH++Df++  G+ W  ++qaLasR+ +p   l++T+vgs  + sk e+e tg+rL+ fA+ l++pf fn++++ 
  Kalax.0623s0005.1.p 259 LAGIQAIIENVADAKRVHVVDFGVRFGVCWTIFMQALASREFPPLeILKLTAVGS-GTMSKLEIEDTGKRLSAFAQGLNIPFTFNIVMVG 347
                          *****************************************665549********.667***************************9999 PP

                 GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                          ++ +l+ e ++v+ +E++a   ++ l ++l    +++++ ++v+++++s++P+++v++e+ea+ n++ F +rf+eal yysa+fd+le+ 
  Kalax.0623s0005.1.p 348 DMLNLSEELFEVEDDEVVAFYASYLLRTML----CVPDRLEHVMRVIRSINPRIMVMIESEANINAPCFGRRFTEALFYYSACFDCLETC 433
                          ************************999998....77777778************************************************ PP

                 GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                          + + + +ri++E    +++i+n++a+eg++r+ rh +l+ Wr  + ++GF++ +ls +   +a+++l+++  ++  +++ e +sl++gWk
  Kalax.0623s0005.1.p 434 MTTSDPDRIFIESLHCRQAIRNILATEGEMRTTRHVKLSVWRTFFARFGFSETRLSRSSLHEANSMLKEFTtGRYCNLDMEGKSLIIGWK 523
                          ***********************************************************************88889************** PP

                 GRAS 364 drpLvsvSaWr 374
                          + p+vsvSaW+
  Kalax.0623s0005.1.p 524 GTPMVSVSAWK 534
                          **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.743134513IPR005202Transcription factor GRAS
PfamPF035149.4E-84169534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MIGRIKDKQF APFVSACLMQ CSHVILVLQF AVLLPESAAS CSKIINRKPQ LTHTVLLRLC  60
NIMKRYKKGD KSGKNPTVVE EGDVEFISFL MSEIPELQRS QEDIVSQPSI DPISVKMDDK  120
SLTAVEVFRV AGERFIREKF IQSSSSGEGD PCRFRHSADV YYSGSSAEQS VALEQFARAT  180
KLLNYCDLLS SCNGNTVQRL VRYFSEALRE RIDRQRGRNF SSQGLSKQPK IDVKDASVSC  240
HPVILTCHRK IPFTRTLHLA GIQAIIENVA DAKRVHVVDF GVRFGVCWTI FMQALASREF  300
PPLEILKLTA VGSGTMSKLE IEDTGKRLSA FAQGLNIPFT FNIVMVGDML NLSEELFEVE  360
DDEVVAFYAS YLLRTMLCVP DRLEHVMRVI RSINPRIMVM IESEANINAP CFGRRFTEAL  420
FYYSACFDCL ETCMTTSDPD RIFIESLHCR QAIRNILATE GEMRTTRHVK LSVWRTFFAR  480
FGFSETRLSR SSLHEANSML KEFTTGRYCN LDMEGKSLII GWKGTPMVSV SAWKFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3919453437375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811562.11e-147PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DWN41e-146A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
STRINGXP_006488851.11e-145(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.19e-49RGA-like protein 3