PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0622s0034.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 441aa    MW: 49394.6 Da    PI: 9.3089
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0622s0034.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-18122171155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta +Aa+a+++a++k++g
  Kalax.0622s0034.2.p 122 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHDAARAYDRAALKFRG 171
                          78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-9122171IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-16122179IPR016177DNA-binding domain
CDDcd000181.88E-13123181No hitNo description
SMARTSM003802.3E-32123185IPR001471AP2/ERF domain
PROSITE profilePS5103217.583123179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17123179IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-5214257IPR016177DNA-binding domain
CDDcd000189.40E-11214257No hitNo description
SMARTSM003803.5E-8215263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMLDLNLMVA EEEVVHMAAE KFSKSCGTSN SSIANVTEAD EDSCSRAGET PYFNLSVGRE  60
KMNTIELFPM RMAVGDFGDE GLKKKQMDIS FNQNGSSKVK EVQQLQPLVA RKSRRGPRSR  120
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHDAAR AYDRAALKFR GVEADINFNP  180
VDYDEDMKKM VNLTKEQFVH ILRRQSTGFA RGSSKYRGVT LHKCWRWEAR MGQFLGKKAY  240
DSAAIECNGR EAVTNFAPIT YGGGTTFERN SLGCDQHLNL NLSISLPSSG YEPTEKQVSV  300
HPHPKYIYHP YSLLDARKPN VDEPSSGGHS RLSLYPQLLF NAEVQAPNKR NEQNSHFQSF  360
PNWTWKLNGQ ASPAPMRLLS SAASSGFSSP ALSVPTAAIH LTKPLHHTAH THYFIQPTAT  420
TMGVTPGMFH YQDQIQLPPR *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278255.11e-116ethylene-responsive transcription factor RAP2-7 isoform X4
SwissprotQ9SK032e-86RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A061GYG51e-113A0A061GYG5_THECC; AP2.7 isoform 3
STRINGXP_004148250.11e-108(Cucumis sativus)
STRINGXP_004164686.11e-108(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-75related to AP2.7