PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0620s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 1389aa MW: 154238 Da PI: 7.0416

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0620s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	1353	1379	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Kalax.0620s0006.1.p 1353 YKCKaeGCGVSFRFISDFSRHRRKtgH 1379 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	3.7E-14	15	56	IPR003349	JmjN domain
PROSITE profile	PS51183	13.619	16	57	IPR003349	JmjN domain
Pfam	PF02375	1.6E-14	17	50	IPR003349	JmjN domain
SMART	SM00558	5.0E-35	235	406	IPR003347	JmjC domain
PROSITE profile	PS51184	32.11	241	406	IPR003347	JmjC domain
SuperFamily	SSF51197	6.04E-25	262	402	No hit	No description
Pfam	PF02373	2.1E-35	270	389	IPR003347	JmjC domain
PROSITE pattern	PS00028	0	1272	1296	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.6E-7	1281	1330	No hit	No description
PROSITE profile	PS50157	12.778	1293	1322	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	1293	1317	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1295	1317	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.4E-6	1300	1323	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.196	1323	1352	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.002	1323	1347	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.5E-10	1324	1347	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1325	1347	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.31E-10	1333	1379	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-10	1348	1376	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	1353	1384	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.5	1353	1379	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1355	1379	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1389 aa Download sequence Send to blast
MRDVEVPHWL IKLPLAPEFR PTDTEFADPI AYISKIENEA RAFGICKIIP PLPRPSKKYV 60 FSNLNRSLLK SPELGSDATA VKSCSGVNEG EVRAVFTTRQ QELGHTEKKD KAAIHMGQGA 120 VNKQVWQSGE LYTLDQFESK AKAFYRSTLG MVKDISPLAI EALFWKADSE NHLYVEYAND 180 VPGSGFGEPS GNGSFQHFHK RRRKRVFRRT TESSRKKYEV CGANESHADI QENNLSSETS 240 NVIVKVNTHV DAPVISDKTA NDIPGVTSPM VYIGMLFSWF AWHVEDHELH SLNFLHTGSS 300 KTWYSVPGDY AFAFEEVIRT RAYGENVDRL AALMMLGEKT TLLSPEVVVA SGIPCCRLVQ 360 NPGEFVVTFP RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNF LPMLSHQQLL 420 YLLAMSFLTR VPRAVLVGAR SSRLRDRMKE ERELSVKKAF IEDILNEDKL LSVLRGAKST 480 YRAVLWDPES LPSLSKEPSL LSKMENTVAN ASDSSNSSVF QSNHNLLDEM RFYTETMKDD 540 YVDDDGFLSD FQVDYGAVAC VACGILGFPF MTVVQPSEAA SLHLRPLLEN KSVAQDGSCL 600 DLDVSIDHSI SVLSKPVVSS NMKVNKEQNA SHRFFRPRVF CLEHAVQVIE LLESKGGAEV 660 LVICHSDFQK IKSHAVAVAG ELGSKYNYDM VPLDCASLED LNLIDLAVDE DREESDEDWS 720 SVLGINLRCC IKMRKNSSSK HVDLALKLFG LPSNITLGSS LSRLKWQHTR SRSKTPILHD 780 SKQVSKLVSN GIKKEKKIIQ YKRRKSKPKS FGSAPVRNTS LDCEENSASF SSDTDIAGIS 840 MSELDNSVNI NKSPASMTEL NQVEGSLVTP WPSLEVMHSD IVDQLEESGS VRCVCVSTSV 900 DVVGADNGVH DTRYKGETSL NCAVEHSSCA DSPVRMEGMS ASENNGQIRS TDTTNIKDTV 960 EHEIAIHVDG KNVLTSMEPD LVAGGIPSAA NPMLGKTHMD NFTEWEVKDE VCAVIPYNER 1020 SNEGSPSLLS QSLTQMSAFE GSSTLLPLAS CSTEEYVLVK DTRSSKVADT PGTEENLCST 1080 SLAKLRDNSI NAEPAYLVSI ETSVGDDSSY EVVQIRTMKG VDDKEDPNNH RLTDFNQVSL 1140 MSAGDESAAA KYMGASKDLY NVDPVCSLAK TGETENNRVK PKPSNRNARK RNRELEQLRE 1200 KKSEVADFIR SPCEGLRPRS KIASSSHYID VRHSYTEEPA IAKKKLKQIP ADTSTSTPNK 1260 TGKQELKGWH RCDLECCILS FKTKAKLLLH QQNQCHIQGC GKKFSCHRYL IVHQRVHVDD 1320 RPLKCSWKGC NMSFKWAWAR TEHLRVHTGE RPYKCKAEGC GVSFRFISDF SRHRRKTGHG 1380 GDTHSPLG*

Sequence ? help Back to Top

Protein Sequence Length: 1389 aa Download sequence Send to blast

MRDVEVPHWL IKLPLAPEFR PTDTEFADPI AYISKIENEA RAFGICKIIP PLPRPSKKYV  60
FSNLNRSLLK SPELGSDATA VKSCSGVNEG EVRAVFTTRQ QELGHTEKKD KAAIHMGQGA  120
VNKQVWQSGE LYTLDQFESK AKAFYRSTLG MVKDISPLAI EALFWKADSE NHLYVEYAND  180
VPGSGFGEPS GNGSFQHFHK RRRKRVFRRT TESSRKKYEV CGANESHADI QENNLSSETS  240
NVIVKVNTHV DAPVISDKTA NDIPGVTSPM VYIGMLFSWF AWHVEDHELH SLNFLHTGSS  300
KTWYSVPGDY AFAFEEVIRT RAYGENVDRL AALMMLGEKT TLLSPEVVVA SGIPCCRLVQ  360
NPGEFVVTFP RAYHVGFSHG FNCGEAANFG TPQWLKVAKE AAVRRAAMNF LPMLSHQQLL  420
YLLAMSFLTR VPRAVLVGAR SSRLRDRMKE ERELSVKKAF IEDILNEDKL LSVLRGAKST  480
YRAVLWDPES LPSLSKEPSL LSKMENTVAN ASDSSNSSVF QSNHNLLDEM RFYTETMKDD  540
YVDDDGFLSD FQVDYGAVAC VACGILGFPF MTVVQPSEAA SLHLRPLLEN KSVAQDGSCL  600
DLDVSIDHSI SVLSKPVVSS NMKVNKEQNA SHRFFRPRVF CLEHAVQVIE LLESKGGAEV  660
LVICHSDFQK IKSHAVAVAG ELGSKYNYDM VPLDCASLED LNLIDLAVDE DREESDEDWS  720
SVLGINLRCC IKMRKNSSSK HVDLALKLFG LPSNITLGSS LSRLKWQHTR SRSKTPILHD  780
SKQVSKLVSN GIKKEKKIIQ YKRRKSKPKS FGSAPVRNTS LDCEENSASF SSDTDIAGIS  840
MSELDNSVNI NKSPASMTEL NQVEGSLVTP WPSLEVMHSD IVDQLEESGS VRCVCVSTSV  900
DVVGADNGVH DTRYKGETSL NCAVEHSSCA DSPVRMEGMS ASENNGQIRS TDTTNIKDTV  960
EHEIAIHVDG KNVLTSMEPD LVAGGIPSAA NPMLGKTHMD NFTEWEVKDE VCAVIPYNER  1020
SNEGSPSLLS QSLTQMSAFE GSSTLLPLAS CSTEEYVLVK DTRSSKVADT PGTEENLCST  1080
SLAKLRDNSI NAEPAYLVSI ETSVGDDSSY EVVQIRTMKG VDDKEDPNNH RLTDFNQVSL  1140
MSAGDESAAA KYMGASKDLY NVDPVCSLAK TGETENNRVK PKPSNRNARK RNRELEQLRE  1200
KKSEVADFIR SPCEGLRPRS KIASSSHYID VRHSYTEEPA IAKKKLKQIP ADTSTSTPNK  1260
TGKQELKGWH RCDLECCILS FKTKAKLLLH QQNQCHIQGC GKKFSCHRYL IVHQRVHVDD  1320
RPLKCSWKGC NMSFKWAWAR TEHLRVHTGE RPYKCKAEGC GVSFRFISDF SRHRRKTGHG  1380
GDTHSPLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	3e-63	9	425	8	351	Transcription factor jumonji (Jmj) family protein
6ip4_A	3e-63	9	425	8	351	Arabidopsis JMJ13
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
STRING	XP_008233302.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0620s0006.1.p

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]