PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0619s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 260aa MW: 27891.6 Da PI: 5.3495 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.5 | 2e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e+ e++ C ++ lC C + H H++vpl Kalax.0619s0017.1.p 4 QCNVCESAEAKVLCCADEAALCWACDHKVHAAnklagkHQRVPL 47 7*****************************66899999999986 PP | |||||||
2 | zf-B_box | 27.9 | 4.8e-09 | 54 | 94 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C + +H + H Kalax.0619s0017.1.p 54 MPKCDICQEAVGYFFCLEDRALLCRSCDVLIHTSnnmvslH 94 799*******9*********************765555555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.381 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.56E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.0E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 2.01E-5 | 45 | 95 | No hit | No description |
SMART | SM00336 | 2.1E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 52 | 93 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 54 | 86 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.34E-8 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MKIQCNVCES AEAKVLCCAD EAALCWACDH KVHAANKLAG KHQRVPLSTT SSHMPKCDIC 60 QEAVGYFFCL EDRALLCRSC DVLIHTSNNM VSLHQRFLLT GVKVGLESAG VSQSSPAVKS 120 TSGQKTLQNE GHEAFKMKLT KSVPNSCSKV LATKVGGDAE TKLAEPPYSG GSSGGAISNW 180 MDDFFGLDDV DQNYAYMDEA SPKADSGKLG DSEQELEADR CLGKVSETAW MVPELSSPSR 240 TLGLQRNPID YVAFVPEMG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581093.1 | 2e-98 | PREDICTED: B-box zinc finger protein 22 | ||||
Swissprot | Q9SYM2 | 8e-78 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A1U8HIT4 | 5e-97 | A0A1U8HIT4_CAPAN; B-box zinc finger protein 22 | ||||
STRING | Solyc07g062160.2.1 | 9e-97 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 3e-80 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0619s0017.1.p |