PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0618s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 33104.1 Da PI: 9.4063 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 100 | 150 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg++ tae Aa a+++a+ kl+ge Kalax.0618s0008.1.p 100 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 150 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.74E-15 | 99 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-31 | 100 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 100 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 100 | 157 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-36 | 100 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 101 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDSNNIIGSS LSQLLLAGGS GTNTIDSIFS YCSPSTSVSE QTSEPLGTSV YLRQRELVQK 60 FAEENRATVA FRRTMQHQMD LRNSLYAANM AGPSLSMKKL YRGVRQRHWG KWVAEIRLPQ 120 NRMRVWLGTY ETAEAAAYAY DRAAYKLRGE YARLNFPNLK DPSTLGFDDS RLSALKSSVD 180 AKIQAICQRV KREKAMKLSK KKSASTKSDH LIPEKSRKSD SPSSSSSVSP VQVSDSWGTE 240 TVSPTMSEDG LWNGENSSQQ AIWSTDGSMA GLADGFNDGY SLARIPSFDP ELIWEVLAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-20 | 99 | 157 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021689714.1 | 1e-104 | ethylene-responsive transcription factor ERF061-like isoform X1 | ||||
Refseq | XP_021689715.1 | 1e-104 | ethylene-responsive transcription factor ERF061-like isoform X2 | ||||
Refseq | XP_021689716.1 | 1e-104 | ethylene-responsive transcription factor ERF061-like isoform X3 | ||||
Swissprot | Q9C7W2 | 2e-66 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A1L6CAU2 | 7e-97 | A0A1L6CAU2_9ROSI; AP2/ERF domain-containing transcription factor | ||||
TrEMBL | A0A1L6CB39 | 7e-97 | A0A1L6CB39_VERFO; AP2/ERF domain-containing transcription factor | ||||
STRING | XP_006439361.1 | 3e-96 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 3e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0618s0008.1.p |
Publications ? help Back to Top | |||
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