PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0615s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 366aa MW: 40213.3 Da PI: 6.4452 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++++ G g+W+t +++ g+ R++k+c++rw +yl Kalax.0615s0008.1.p 25 RGPWTPEEDELLSSYINREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 83 | 123 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Kalax.0615s0008.1.p 83 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.747 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.77E-28 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 25 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-10 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 73 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 75 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 83 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-11 | 83 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MRKPTSSTTS TSSITPCCTK VGLKRGPWTP EEDELLSSYI NREGEGRWRT LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLSKKLINQ GIDPRTHKPL SNTTTDPSPS AAAKNDPKAS NLSSALVSAA NPNDNTFSAT 180 GLDDVVVNNN GNQRLVQSYV VEDEDDHFQA MMIGNAGLVG PGGNSNFLNS RSSNNNDNEQ 240 EQHVDDEINY SSCGGEDVFS SFLNSLINED EVFINNDTGH QLQYPHNQLL QVHHHPIMSG 300 IVTPPPSADN AFGYVNGNNG GVDHSGWETS AALMSSSAGN AAYGELNVCG SRRRINEHHD 360 DQRQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 23 | 127 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-24 | 23 | 127 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-24 | 23 | 127 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594698.1 | 2e-99 | transcription repressor MYB5-like | ||||
TrEMBL | A0A0A0R621 | 1e-100 | A0A0A0R621_PAESU; MYB transcription factor | ||||
STRING | cassava4.1_011594m | 9e-99 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-79 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0615s0008.1.p |