PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0615s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 33004.9 Da PI: 7.0188 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + +r r +lg+f taeeAa+a+++a+ l+g Kalax.0615s0007.1.p 34 KKFVGVRQRP-SGKWVAEIKDTT---QRIRMWLGTFETAEEAARAYDEAACLLRG 84 589*******.7*********43...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.92E-32 | 34 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 35 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.52 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 35 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-19 | 35 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-35 | 35 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEIQFQEQNS PSLSYATCHK GRVQDRKVGS NRNKKFVGVR QRPSGKWVAE IKDTTQRIRM 60 WLGTFETAEE AARAYDEAAC LLRGSNTRTN FVYHGSTPIS ALPLKIRNQL IQKKNNVKKQ 120 KQILPLSKPS TISIPRVTTT PVSSSQYSND SGKSNSTANS TVSFDGTNEE MRPLENAYRP 180 DLSNCYGELE QDTYLFNQSW AFPNGFDQLH LNPDEFQFQM PKYEDCLLPA TTGTDEVQIT 240 TEFDLMRVQR QISASLYAMN GVNEYLEHKT ESSEDIWDLQ HLYKLFCAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 32 | 91 | 2 | 62 | ATERF1 |
3gcc_A | 6e-15 | 32 | 91 | 2 | 62 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453111.1 | 2e-77 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | B9GY71 | 4e-76 | B9GY71_POPTR; Uncharacterized protein | ||||
STRING | VIT_06s0004g00490.t01 | 7e-75 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-38 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0615s0007.1.p |