PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0609s0004.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 32153.4 Da PI: 8.4737 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 110 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+++W++Ia+++ gR++k+c++rw++ Kalax.0609s0004.2.p 110 RGHWRPAEDVKLKELVDQFGPHNWNLIAERLL-GRSGKSCRLRWFNQ 155 899****************************9.***********996 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 163 | 205 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+e+l++ +k++G++ W+ I++ ++ gRt++ +k++w+ Kalax.0609s0004.2.p 163 RPFSAEEEEKLLQSHKLFGNK-WAMISKLFP-GRTDNAVKNHWHV 205 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.006 | 105 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 109 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 110 | 155 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.73E-29 | 110 | 203 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 111 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.79E-12 | 113 | 154 | No hit | No description |
PROSITE profile | PS51294 | 25.064 | 157 | 211 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 161 | 209 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-13 | 162 | 204 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.86E-11 | 164 | 204 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 164 | 210 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MKLQNLKSNA ANGYTSFFPC PPPLFPSKNL DKEETGGNMR KPSDLNHASV WDEGENTYYF 60 KSNRFDLNER LYGEGRSTDE AAEIKHIYQD CDAEAPNDGR SENIQKLCAR GHWRPAEDVK 120 LKELVDQFGP HNWNLIAERL LGRSGKSCRL RWFNQLDPKI NKRPFSAEEE EKLLQSHKLF 180 GNKWAMISKL FPGRTDNAVK NHWHVIMARK QREQNICVYK KLKPNPISAA SLKEFVACSD 240 DSTVTTVSNT GVELMLTPTS ARETPCLFAK SPQPPSPMGM PPD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 108 | 210 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622094.1 | 3e-71 | transcription factor MYB56-like | ||||
Swissprot | Q6R053 | 3e-62 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | A0A2C9VAJ6 | 8e-70 | A0A2C9VAJ6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024606m | 1e-70 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 4e-62 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0609s0004.2.p |
Publications ? help Back to Top | |||
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